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  5. AMTR_s00157p00080130

AMTR_s00157p00080130 (ATRBP47B, RBP47B,...)


Aliases : ATRBP47B, RBP47B, evm_27.TU.AmTr_v1.0_scaffold00157.43

Description : Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00157p00080130
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.03 OrthoFinder output from all 47 species
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Aev_g09512 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ala_g13789 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aob_g28200 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aop_g10963 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g07985 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.30G047300.1 ATRBP47B,... regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
GSVIVT01037634001 RBP45B, ATRBP45B Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia 0.04 OrthoFinder output from all 47 species
GSVIVT01037635001 ATRBP45C Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os04g37690.1 ATRBP47C',... mRNA-binding regulatory factor (RBP45/47) 0.05 OrthoFinder output from all 47 species
Len_g17526 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Lfl_g33868 ATRBP45C regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
MA_10430323g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
Mp8g07840.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Nbi_g09272 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ore_g09196 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ore_g34352 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Pir_g06468 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Pnu_g33240 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sam_g39083 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Solyc01g108500.4.1 ATRBP47B,... mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
Solyc07g064510.3.1 ATRBP45C, Solyc07g064510 mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Solyc10g005260.3.1 RBP45B,... mRNA-binding regulatory factor (RBP45/47) 0.05 OrthoFinder output from all 47 species
Spa_g07132 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Spa_g51224 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Zm00001e011585_P002 ATRBP45C, Zm00001e011585 mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Zm00001e012505_P001 ATRBP45A,... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Zm00001e022780_P001 ATRBP47C',... mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030328 prenylcysteine catabolic process IEP HCCA
BP GO:0030329 prenylcysteine metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 174 244
IPR000504 RRM_dom 81 145
No external refs found!