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  5. AMTR_s00155p00078230

AMTR_s00155p00078230 (EMB2271,...)


Aliases : EMB2271, evm_27.TU.AmTr_v1.0_scaffold00155.51

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Rrp9/YAO1 assembly factor


Gene families : OG0006246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00155p00078230

Target Alias Description ECC score Gene Family Method Actions
AT4G05410 YAO Transducin/WD40 repeat-like superfamily protein 0.08 OrthoFinder output from all 47 species
Ala_g12212 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.08 OrthoFinder output from all 47 species
Als_g06304 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0283.g063046 YAO SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g61382 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.23G029700.1 EMB2271, Ceric.23G029700 SSU processome assembly factor *(RRP9/YAO1) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021179.21 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Cre06.g278175 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Ehy_g31380 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01021618001 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Gb_41592 YAO SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
LOC_Os03g42770.1 YAO, LOC_Os03g42770 SSU processome assembly factor (RRP9/YAO1) 0.08 OrthoFinder output from all 47 species
Len_g28722 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
MA_10426194g0010 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.04 OrthoFinder output from all 47 species
Mp8g03800.1 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009870 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g17762 No alias SSU processome assembly factor *(RRP9/YAO1) & original... 0.04 OrthoFinder output from all 47 species
Solyc02g069770.3.1 EMB2271, Solyc02g069770 SSU processome assembly factor (RRP9/YAO1) 0.1 OrthoFinder output from all 47 species
Spa_g18346 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e005033_P001 YAO, Zm00001e005033 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
Zm00001e012407_P002 EMB2271, Zm00001e012407 SSU processome assembly factor (RRP9/YAO1) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 299 331
IPR001680 WD40_repeat 253 290
IPR001680 WD40_repeat 152 187
IPR001680 WD40_repeat 337 371
IPR001680 WD40_repeat 223 248
No external refs found!