AMTR_s00147p00053080 (GATA15,...)

Aliases : GATA15, evm_27.TU.AmTr_v1.0_scaffold00147.19

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor

Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00147p00053080

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00176280	GATA20,...	No description available	0.03	OrthoFinder output from all 47 species
Adi_g036776	GATA5	transcription factor *(A/B-GATA) & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g057432	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086607	GATA12	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g05309	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g50721	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01017011001	GATA12	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
LOC_Os02g12790.1	GATA22, CGA1,...	transcription factor (GATA)	0.05	OrthoFinder output from all 47 species
LOC_Os02g43150.1	GATA5, LOC_Os02g43150	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
LOC_Os05g44400.1	GATA12, LOC_Os05g44400	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
LOC_Os06g37450.1	GATA22, CGA1,...	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
LOC_Os10g32070.1	GATA1, LOC_Os10g32070	transcription factor (GATA)	0.01	OrthoFinder output from all 47 species
LOC_Os10g40810.1	GATA2, LOC_Os10g40810	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Len_g03294	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g40724	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e029060_P002	GATA9, Zm00001e029060	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e037876_P002	GATA4, Zm00001e037876	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	106	141

External Links

No external refs found!

AMTR_s00147p00053080 (GATA15,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation