AMTR_s00137p00042790 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00137.14

Description : Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor

Gene families : OG0001945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001945_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00137p00042790

Target	Alias	Description	ECC score	Gene Family Method
AT2G24060	No alias	Translation initiation factor 3 protein	0.08	OrthoFinder output from all 47 species
Adi_g025876	No alias	translation initiation factor *(IF-3) & original...	0.08	OrthoFinder output from all 47 species
Adi_g102476	No alias	translation initiation factor *(IF-3) & original...	0.05	OrthoFinder output from all 47 species
Aev_g11375	No alias	translation initiation factor *(IF-3) & original...	0.03	OrthoFinder output from all 47 species
Ala_g01530	No alias	translation initiation factor *(IF-3) & original...	0.07	OrthoFinder output from all 47 species
Als_g00759	No alias	translation initiation factor *(IF-3) & original...	0.04	OrthoFinder output from all 47 species
Aob_g39107	No alias	translation initiation factor *(IF-3) & original...	0.05	OrthoFinder output from all 47 species
Aop_g14624	No alias	translation initiation factor *(IF-3) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene35728.t1	Aspi01Gene35728	translation initiation factor *(IF-3) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0095.g043623	No alias	translation initiation factor *(IF-3) & original...	0.05	OrthoFinder output from all 47 species
Cba_g03761	No alias	translation initiation factor *(IF-3) & original...	0.07	OrthoFinder output from all 47 species
Cre01.g001550	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dcu_g02518	No alias	translation initiation factor *(IF-3) & original...	0.07	OrthoFinder output from all 47 species
Dde_g10882	No alias	translation initiation factor *(IF-3) & original...	0.07	OrthoFinder output from all 47 species
GSVIVT01023642001	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
LOC_Os02g55120.1	LOC_Os02g55120	IF-3 translation initiation factor	0.08	OrthoFinder output from all 47 species
Len_g15141	No alias	translation initiation factor *(IF-3) & original...	0.07	OrthoFinder output from all 47 species
Lfl_g37528	No alias	translation initiation factor *(IF-3) & original...	0.06	OrthoFinder output from all 47 species
MA_18402g0010	No alias	Translation initiation factor IF3-2, chloroplastic...	0.02	OrthoFinder output from all 47 species
Msp_g11764	No alias	translation initiation factor *(IF-3) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g00833	No alias	translation initiation factor *(IF-3) & original...	0.04	OrthoFinder output from all 47 species
Ore_g07395	No alias	translation initiation factor *(IF-3) & original...	0.06	OrthoFinder output from all 47 species
Pnu_g10213	No alias	translation initiation factor *(IF-3) & original...	0.04	OrthoFinder output from all 47 species
Pp3c14_5800V3.1	Pp3c14_5800	Translation initiation factor 3 protein	0.02	OrthoFinder output from all 47 species
Ppi_g00723	No alias	translation initiation factor *(IF-3) & original...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0113.g020863	No alias	translation initiation factor *(IF-3) & original...	0.04	OrthoFinder output from all 47 species
Solyc07g005830.3.1	Solyc07g005830	IF-3 translation initiation factor	0.06	OrthoFinder output from all 47 species
Spa_g00393	No alias	translation initiation factor *(IF-3) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e016109_P001	Zm00001e016109	IF-3 translation initiation factor	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006413	translational initiation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016987	sigma factor activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019814	Translation_initiation_fac_3_N	92	158
IPR019815	Translation_initiation_fac_3_C	166	251

External Links

No external refs found!

AMTR_s00137p00042790 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation