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  5. AMTR_s00126p00110160

AMTR_s00126p00110160 (PMH2, ATRH53,...)


Aliases : PMH2, ATRH53, evm_27.TU.AmTr_v1.0_scaffold00126.53

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00126p00110160

Target Alias Description ECC score Gene Family Method Actions
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.05 OrthoFinder output from all 47 species
Adi_g023797 PMH1, ATRH9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055951 emb1138 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g079817 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Adi_g086708 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22353 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Als_g07437 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Als_g26679 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Aob_g15554 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.08 OrthoFinder output from all 47 species
Aop_g04482 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene27689.t1 emb1138, Aspi01Gene27689 group-II intron splicing RNA helicase *(RH3) & original... 0.07 OrthoFinder output from all 47 species
Aspi01Gene57148.t1 emb1138, Aspi01Gene57148 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023578 emb1138 not classified & original description: CDS=239-2545 0.03 OrthoFinder output from all 47 species
Azfi_s0166.g054407 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Cba_g11616 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Ceric.05G054100.1 emb1138, Ceric.05G054100 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Cre17.g727700 emb1138 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dac_g12671 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g39360 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Dde_g04423 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g05028 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g07853 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031360001 emb1138 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
Gb_04849 emb1138 RH3 plastidial RNA basal splicing factor 0.12 OrthoFinder output from all 47 species
LOC_Os03g61220.1 emb1138, LOC_Os03g61220 RH3 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
Len_g12708 emb1138 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g23119 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g10151 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.08 OrthoFinder output from all 47 species
Mp3g17170.1 emb1138 RH3 plastidial RNA basal splicing factor. RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Msp_g07724 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.08 OrthoFinder output from all 47 species
Nbi_g06285 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Pir_g19704 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g13008 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Pp3c2_2520V3.1 emb1138, Pp3c2_2520 DEAD box RNA helicase (RH3) 0.01 OrthoFinder output from all 47 species
Ppi_g43098 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0230.g026421 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Sam_g09733 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.07 OrthoFinder output from all 47 species
Smo10677 emb1138 RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
Smo99603 emb1138 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.03 OrthoFinder output from all 47 species
Solyc08g042050.3.1 emb1138, Solyc08g042050 RH3 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
Spa_g06691 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Spa_g17328 emb1138 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g40629 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g07132 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e011716_P001 emb1138, Zm00001e011716 RH3 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 351 418
IPR011545 DEAD/DEAH_box_helicase_dom 104 272
No external refs found!