Sequence Description Alias PCC hrr AMTR_s00007p00061550 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor JKD, evm_27.TU.AmTr_v1.0_scaffold00007.32 0.9394100494957205 1 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.919691437898365 9 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome ATPREP1, PREP1, ATZNMP, evm_27.TU.AmTr_v1.0_scaffold00126.1 0.9168303887340106 8 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9151093737961066 36 AMTR_s00165p00028990 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00165.13 0.911780213993385 5 AMTR_s00024p00238310 YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana YLMG2, ATYLMG2, evm_27.TU.AmTr_v1.0_scaffold00024.270 0.9116292404457986 6 AMTR_s00119p00030390 Protein NCA1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00119.14 0.9096542493654772 7 AMTR_s00007p00251190 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR6 CRR6, evm_27.TU.AmTr_v1.0_scaffold00007.284 0.9079686475395657 8 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9068914323492165 52 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.9049979512102321 31 AMTR_s00045p00209230 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component PPI2, ATTOC159, TOC159, TOC160, TOC86, evm_27.TU.AmTr_v1.0_scaffold00045.285 0.9043788079649554 11 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.9039508485512484 15 AMTR_s00107p00109770 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.FtsH4/11 component FTSH11, evm_27.TU.AmTr_v1.0_scaffold00107.33 0.9019670318664246 13 AMTR_s00001p00232760 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH5, VAR1, evm_27.TU.AmTr_v1.0_scaffold00001.249 0.9002665721843305 26 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor emb2726, evm_27.TU.AmTr_v1.0_scaffold00109.135 0.8992898707650467 44 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.8992364789838211 39 AMTR_s00044p00131190 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPB, evm_27.TU.AmTr_v1.0_scaffold00044.119 0.8988432547136735 31 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.8986627090679706 31 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2, evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8970744055627545 33 AMTR_s00016p00087320 evm_27.TU.AmTr_v1.0_scaffold00016.49 0.8952012359711546 20 AMTR_s00037p00164200 Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIII-type starch synthase ATSS3, SS3, evm_27.TU.AmTr_v1.0_scaffold00037.78 0.8943363672013256 21 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA14, hda14, evm_27.TU.AmTr_v1.0_scaffold00054.32 0.8941555912748997 70 AMTR_s00170p00069910 evm_27.TU.AmTr_v1.0_scaffold00170.33 0.8932104993877746 23 AMTR_s00067p00206610 evm_27.TU.AmTr_v1.0_scaffold00067.230 0.8923547717893757 24 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8908885525977676 54 AMTR_s00166p00060690 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor ATRBP31, CP31, ATRBP33, RBP31, evm_27.TU.AmTr_v1.0_scaffold00166.36 0.8889821390963969 26 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component RPL4, evm_27.TU.AmTr_v1.0_scaffold00029.338 0.8883600251726347 64 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.8883335480868645 51 AMTR_s00147p00070270 Cytoskeleton.cp-actin-dependent plastid movement.CHUP motility factor CHUP1, evm_27.TU.AmTr_v1.0_scaffold00147.32 0.8877901071284854 29 AMTR_s00012p00254100 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.273 0.885667380113383 47 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.88545102453989 45 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component VAR2, FTSH2, evm_27.TU.AmTr_v1.0_scaffold00106.79 0.885392884147934 66 AMTR_s00044p00107090 Cytoskeleton.cp-actin-dependent plastid movement.PMI1/PMI15 cp-actin stability factor PMI1, evm_27.TU.AmTr_v1.0_scaffold00044.78 0.8845818348779018 33 AMTR_s00001p00022550 Redox homeostasis.enzymatic reactive oxygen species scavengers.catalase CAT2, evm_27.TU.AmTr_v1.0_scaffold00001.7 0.8813385017889638 34 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1, evm_27.TU.AmTr_v1.0_scaffold00016.120 0.8802540190797935 42 AMTR_s00177p00036720 evm_27.TU.AmTr_v1.0_scaffold00177.14 0.8796542320791749 36 AMTR_s00152p00085890 Photosynthesis.photorespiration.hydroxypyruvate reductase HPR, ATHPR1, evm_27.TU.AmTr_v1.0_scaffold00152.29 0.8791798625953501 90 AMTR_s00149p00031690 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor ATSCO1/CPEF-G, SCO1, ATSCO1, evm_27.TU.AmTr_v1.0_scaffold00149.10 0.8782561618746718 38 AMTR_s00019p00118960 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic55 component TIC55-II, evm_27.TU.AmTr_v1.0_scaffold00019.95 0.8780264767100668 39 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) ATRCCR, ACD2, evm_27.TU.AmTr_v1.0_scaffold00132.27 0.877853969981456 51 AMTR_s00100p00127450 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00100.46 0.8769697282965752 41 AMTR_s00135p00104240 Solute transport.carrier-mediated transport.DMT superfamily.PUP organic cation transporter PUP1, ATPUP1, evm_27.TU.AmTr_v1.0_scaffold00135.60 0.8765512847574896 42 AMTR_s00002p00212650 Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor PMSR4, evm_27.TU.AmTr_v1.0_scaffold00002.223 0.8762475718524559 43 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8755733729322221 91 AMTR_s00029p00187590 Photosynthesis.calvin cycle.fructose-1,6-bisphosphatase HCEF1, evm_27.TU.AmTr_v1.0_scaffold00029.249 0.8730965410374186 59 AMTR_s00030p00231690 evm_27.TU.AmTr_v1.0_scaffold00030.187 0.8725903195148019 46 AMTR_s00010p00216200 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase SBPASE, evm_27.TU.AmTr_v1.0_scaffold00010.221 0.8713646353023187 93 AMTR_s00095p00166740 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.DAC factor evm_27.TU.AmTr_v1.0_scaffold00095.146 0.8699742192783739 48 AMTR_s00006p00263760 Disease resistance protein RPM1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.255 0.8697749507320677 49 AMTR_s00077p00172700 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhN component evm_27.TU.AmTr_v1.0_scaffold00077.191 0.8696372126313826 70 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component CcdA, evm_27.TU.AmTr_v1.0_scaffold00061.187 0.8692597591354391 94 AMTR_s00097p00060630 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase LYC, evm_27.TU.AmTr_v1.0_scaffold00097.13 0.8686500862575391 52 AMTR_s00039p00159460 evm_27.TU.AmTr_v1.0_scaffold00039.112 0.8685958139488769 53 AMTR_s00135p00058090 Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00135.24 0.8678550225540772 54 AMTR_s00019p00088750 Protein TSS OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.66 0.8671722309033987 55 AMTR_s00064p00107710 RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor GATA22, CGA1, GNL, evm_27.TU.AmTr_v1.0_scaffold00064.40 0.8659894032136485 57 AMTR_s00092p00083700 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.44 0.8642531193118372 58 AMTR_s00058p00051650 evm_27.TU.AmTr_v1.0_scaffold00058.23 0.8639575000934444 59 AMTR_s00011p00136520 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP8/TAC6 component PTAC6, evm_27.TU.AmTr_v1.0_scaffold00011.39 0.8635469221799607 60 AMTR_s00012p00255830 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase RCA, evm_27.TU.AmTr_v1.0_scaffold00012.292 0.8633802557069996 88 AMTR_s00041p00199430 evm_27.TU.AmTr_v1.0_scaffold00041.178 0.8624951839068155 69 AMTR_s00072p00130550 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00072.71 0.8624378479468285 63 AMTR_s00009p00233000 evm_27.TU.AmTr_v1.0_scaffold00009.187 0.8620916724909522 95 AMTR_s00058p00152490 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.phosphorylation/dephosphorylation.PPH1/TAP38 phosphatase TAP38, PPH1, evm_27.TU.AmTr_v1.0_scaffold00058.124 0.8618600567705126 66 AMTR_s00032p00120910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor IDD4, AtIDD4, evm_27.TU.AmTr_v1.0_scaffold00032.84 0.8615397910189686 76 AMTR_s00022p00234830 evm_27.TU.AmTr_v1.0_scaffold00022.325 0.8605398271499238 69 AMTR_s00002p00249620 Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica CPSAR1, EMB269, ATOBGC, evm_27.TU.AmTr_v1.0_scaffold00002.348 0.8598739644626606 70 AMTR_s00001p00271570 Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00001.492 0.8593759780912441 71 AMTR_s00001p00263390 Protein biosynthesis.aminoacyl-tRNA synthetase activities.proline-tRNA ligase OVA6, PRORS1, evm_27.TU.AmTr_v1.0_scaffold00001.393 0.8578799131576819 72 AMTR_s00181p00022280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP71A26, evm_27.TU.AmTr_v1.0_scaffold00181.8 0.8571783334454361 75 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase SQD2, evm_27.TU.AmTr_v1.0_scaffold00029.342 0.8571436438140372 83 AMTR_s00012p00254470 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.276 0.8570322771245444 77 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28, evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8569871856224988 96 AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.8568079246627761 96 AMTR_s00003p00079190 External stimuli response.temperature.temperature sensors.PHY-B temperature sensor protein HY3, OOP1, PHYB, evm_27.TU.AmTr_v1.0_scaffold00003.45 0.8561258956857087 80 AMTR_s00038p00182380 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CRY cryptochrome photoreceptor HY4, ATCRY1, BLU1, OOP2, CRY1, evm_27.TU.AmTr_v1.0_scaffold00038.124 0.8556746536357903 82 AMTR_s00055p00140570 evm_27.TU.AmTr_v1.0_scaffold00055.62 0.8556133187007009 83 AMTR_s00025p00151950 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.171 0.8551913021215456 84 AMTR_s00001p00262360 evm_27.TU.AmTr_v1.0_scaffold00001.385 0.8544775837228705 86 AMTR_s00010p00259290 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.PKS phototropin signalling factor PKS4, evm_27.TU.AmTr_v1.0_scaffold00010.421 0.8534339083560545 87 AMTR_s00171p00052300 Solute transport.carrier-mediated transport.DMT superfamily.UmamiT-type solute transporter evm_27.TU.AmTr_v1.0_scaffold00171.33 0.8530995994771893 88 AMTR_s00357p00011320 MRL1, evm_27.TU.AmTr_v1.0_scaffold00357.3 0.8523906603888871 89 AMTR_s00451p00003410 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1, evm_27.TU.AmTr_v1.0_scaffold00451.1 0.8520079949776134 90 AMTR_s00153p00069260 Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00153.36 0.8518759432716907 91 AMTR_s00092p00098850 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00092.56 0.8518589976797963 92 AMTR_s00110p00125440 Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.100 0.8514657621598856 93 AMTR_s00065p00176540 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NADP-dependent glyceraldehyde 3-phosphate dehydrogenase ALDH11A3, evm_27.TU.AmTr_v1.0_scaffold00065.146 0.8505659878164533 95 AMTR_s00009p00268340 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00009.422 0.8502820516120966 99 AMTR_s00065p00043720 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase GPX1, ATGPX1, evm_27.TU.AmTr_v1.0_scaffold00065.18 0.8494836679192594 100