AMTR_s00110p00142760 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.117

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.nMAT1/2 type-I splicing factor

Gene families : OG0003627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003627_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00110p00142760

Target	Alias	Description	ECC score	Gene Family Method
AT1G30010	No alias	Intron maturase, type II family protein	0.03	OrthoFinder output from all 47 species
Adi_g021888	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.02	OrthoFinder output from all 47 species
Cba_g20844	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.04	OrthoFinder output from all 47 species
Cba_g78363	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g22489	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.03	OrthoFinder output from all 47 species
Dcu_g01811	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.02	OrthoFinder output from all 47 species
GSVIVT01023127001	No alias	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
Gb_27973	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor	0.02	OrthoFinder output from all 47 species
Len_g09777	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g18272	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.03	OrthoFinder output from all 47 species
Msp_g39085	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.03	OrthoFinder output from all 47 species
Ppi_g05248	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14531	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc08g077385.1.1	Solyc08g077385	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	OrthoFinder output from all 47 species
Spa_g11172	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.02	OrthoFinder output from all 47 species
Zm00001e000458_P001	Zm00001e000458	nMAT1/2 type-I mitochondrial RNA splicing factor	0.04	OrthoFinder output from all 47 species
Zm00001e000640_P001	Zm00001e000640	nMAT1/2 type-I mitochondrial RNA splicing factor	0.05	OrthoFinder output from all 47 species
Zm00001e011594_P001	Zm00001e011594	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003964	RNA-directed DNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071897	DNA biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024937	Domain_X	472	581
IPR000477	RT_dom	159	438

External Links

No external refs found!

AMTR_s00110p00142760 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation