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  5. AMTR_s00110p00064100

AMTR_s00110p00064100 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.28

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOB1 endonuclease


Gene families : OG0006353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00064100

Target Alias Description ECC score Gene Family Method Actions
AT5G41190 No alias CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)... 0.11 OrthoFinder output from all 47 species
Aev_g14587 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Als_g00927 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Aop_g21107 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Azfi_s0501.g073867 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Ceric.01G032400.1 Ceric.01G032400 pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020964.11 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Cre01.g031750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Dac_g28114 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g15039 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01019776001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Gb_33378 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.04 OrthoFinder output from all 47 species
LOC_Os02g02360.1 LOC_Os02g02360 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.05 OrthoFinder output from all 47 species
Len_g10290 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Mp1g16460.1 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.07 OrthoFinder output from all 47 species
Ppi_g02269 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0180.g024790 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Sam_g19265 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Solyc08g007990.3.1 Solyc08g007990 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.05 OrthoFinder output from all 47 species
Zm00001e013450_P001 Zm00001e013450 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.03 OrthoFinder output from all 47 species
Zm00001e025376_P003 Zm00001e025376 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0015093 ferrous iron transmembrane transporter activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR014881 NOB1_Zn-bd 466 537
No external refs found!