Sequence Description Alias PCC hrr AMTR_s00002p00225030 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.247 0.9360693659158086 1 AMTR_s00019p00240430 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC9 component OSB3, evm_27.TU.AmTr_v1.0_scaffold00019.351 0.9156909448777953 2 AMTR_s00155p00078230 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Rrp9/YAO1 assembly factor EMB2271, evm_27.TU.AmTr_v1.0_scaffold00155.51 0.9034006821835646 6 AMTR_s00006p00266620 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.pre-40S subunit nuclear export.Ltv1 export factor evm_27.TU.AmTr_v1.0_scaffold00006.291 0.8986951628936114 5 AMTR_s00032p00058660 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NOG1 regulatory GTPase evm_27.TU.AmTr_v1.0_scaffold00032.37 0.8962204540745261 16 AMTR_s00049p00084680 Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.extensins (EXTs).glycosylation.EXT serine O-alpha-galactosyltransferase evm_27.TU.AmTr_v1.0_scaffold00049.55 0.8961042453020006 68 AMTR_s00061p00067260 High mobility group B protein 15 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.42 0.8947618673208086 52 AMTR_s00071p00070350 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase ATKRS-1, evm_27.TU.AmTr_v1.0_scaffold00071.41 0.8944459640109744 84 AMTR_s00121p00103870 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00121.21 0.8938806483567983 22 AMTR_s00114p00123360 evm_27.TU.AmTr_v1.0_scaffold00114.56 0.8935699874718677 32 AMTR_s00003p00268400 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3b component EIF3B-2, ATEIF3B-2, EIF3B, evm_27.TU.AmTr_v1.0_scaffold00003.398 0.8925516800955828 13 AMTR_s00032p00197250 Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.178 0.8918181144918755 14 AMTR_s00051p00218610 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.PTEN lipid phosphatase PEN2, ATPEN2, evm_27.TU.AmTr_v1.0_scaffold00051.97 0.8917531952969906 15 AMTR_s00001p00273100 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst CYP40, SQN, evm_27.TU.AmTr_v1.0_scaffold00001.594 0.8910827065820672 16 AMTR_s00045p00182070 DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.224 0.8905658287696031 19 AMTR_s00009p00218530 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.small subunit proteome.mtRPS9 component evm_27.TU.AmTr_v1.0_scaffold00009.156 0.888401221530982 20 AMTR_s00058p00122560 Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.84 0.8882193424866766 21 AMTR_s00058p00176500 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT3 gamma subunit evm_27.TU.AmTr_v1.0_scaffold00058.166 0.8860047582749486 89 AMTR_s00082p00169320 RNA biosynthesis.transcriptional activation.GeBP transcription factor evm_27.TU.AmTr_v1.0_scaffold00082.40 0.8850089186935047 32 AMTR_s00096p00039880 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Mpp10 assembly factor evm_27.TU.AmTr_v1.0_scaffold00096.17 0.8848460481984803 41 AMTR_s00109p00121860 evm_27.TU.AmTr_v1.0_scaffold00109.121 0.8847925060607688 97 AMTR_s00058p00127050 Protein biosynthesis.aminoacyl-tRNA synthetase activities.proline-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00058.91 0.8837682142027323 67 AMTR_s00110p00121530 Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.96 0.8835785378249936 28 AMTR_s00092p00126260 evm_27.TU.AmTr_v1.0_scaffold00092.90 0.8821931616534934 35 AMTR_s00046p00229090 evm_27.TU.AmTr_v1.0_scaffold00046.172 0.8820189278378349 70 AMTR_s00109p00118420 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NUG1/NSN1 regulatory GTPase evm_27.TU.AmTr_v1.0_scaffold00109.117 0.8817242636810492 33 AMTR_s00126p00067580 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP14 assembly factor evm_27.TU.AmTr_v1.0_scaffold00126.26 0.8813615592515704 34 AMTR_s00088p00153240 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP133 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00088.123 0.8812201967724306 94 AMTR_s00036p00239020 Chromatin organisation.histone modifications.histone arginine methylation.PRMT1 histone methylase ATPRMT11, ATPRMT1B, PRMT11, PRMT1B, evm_27.TU.AmTr_v1.0_scaffold00036.188 0.881098463776905 65 AMTR_s00016p00227740 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.RMI1 non-catalytic component ATRMI1, BLAP75, RMI1, evm_27.TU.AmTr_v1.0_scaffold00016.214 0.8796099273878394 38 AMTR_s00038p00088230 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase VALRS, TWN2, evm_27.TU.AmTr_v1.0_scaffold00038.43 0.8791835937634074 81 AMTR_s00072p00157670 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.PES component evm_27.TU.AmTr_v1.0_scaffold00072.97 0.8783853361127454 89 AMTR_s00119p00124540 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.Tom40 component TOM40, evm_27.TU.AmTr_v1.0_scaffold00119.97 0.8777901114996385 44 AMTR_s00065p00140150 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP4/PCN assembly factor evm_27.TU.AmTr_v1.0_scaffold00065.96 0.8773944816379412 45 AMTR_s00030p00176130 Transcription factor LHW OS=Arabidopsis thaliana LHW, evm_27.TU.AmTr_v1.0_scaffold00030.109 0.8773809291850643 46 AMTR_s00022p00221050 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.XPO2 export karyopherin evm_27.TU.AmTr_v1.0_scaffold00022.277 0.876497768439474 47 AMTR_s00092p00090110 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA chromatin transcription factor PARL1, ATNUC-L1, NUC-L1, evm_27.TU.AmTr_v1.0_scaffold00092.50 0.875550430491219 58 AMTR_s00029p00242040 DNA damage response.DNA repair mechanisms.nucleotide excision repair (NER).UV-damaged DNA-binding protein (UV-DDB) heterodimer.DDB2 component DDB2, evm_27.TU.AmTr_v1.0_scaffold00029.419 0.8751964442037885 50 AMTR_s00066p00115140 Protein biosynthesis.aminoacyl-tRNA synthetase activities.tryptophan-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00066.107 0.8740560312776061 74 AMTR_s00019p00154740 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp43 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00019.144 0.8736398396490992 53 AMTR_s00003p00049560 FIP1[V]-like protein OS=Arabidopsis thaliana FIP1[V], ATFIP1[V], FIPS5, ATFIPS5, evm_27.TU.AmTr_v1.0_scaffold00003.30 0.8719695412679275 57 AMTR_s00078p00196190 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUP50 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00078.205 0.8717634621477189 60 AMTR_s00039p00202100 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.small subunit proteome.mtRPS5 component evm_27.TU.AmTr_v1.0_scaffold00039.167 0.8713656291776964 61 AMTR_s00039p00135490 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP1/TAC3 component PTAC3, evm_27.TU.AmTr_v1.0_scaffold00039.93 0.8707285438719174 72 AMTR_s00056p00059990 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.PWP2/UTP1 assembly factor PWP2, ATPWP2, evm_27.TU.AmTr_v1.0_scaffold00056.40 0.8707184304413196 64 AMTR_s00044p00129280 RNA processing.RNA decay.exosome complex.associated co-factors.Dis3/RRP44 exoribonuclease EMB2763, evm_27.TU.AmTr_v1.0_scaffold00044.117 0.8702105363563054 66 AMTR_s00048p00053570 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.TOZ assembly factor TOZ, evm_27.TU.AmTr_v1.0_scaffold00048.18 0.8688820287556688 70 AMTR_s00007p00105480 Protein modification.phosphorylation.CAMK kinase superfamily.CDPK kinase CPK13, evm_27.TU.AmTr_v1.0_scaffold00007.63 0.8687754147793685 72 AMTR_s00030p00241220 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NOG1 regulatory GTPase evm_27.TU.AmTr_v1.0_scaffold00030.211 0.8687265884439542 74 AMTR_s00111p00111440 evm_27.TU.AmTr_v1.0_scaffold00111.85 0.8682906800512401 76 AMTR_s00045p00160070 Protein modification.phosphorylation.TKL kinase superfamily.Extensin kinase evm_27.TU.AmTr_v1.0_scaffold00045.179 0.867716753360519 95 AMTR_s00048p00075850 RNA biosynthesis.transcriptional activation.HSF (heat shock) transcription factor HSFA1B, ATHSF3, HSF3, ATHSFA1B, evm_27.TU.AmTr_v1.0_scaffold00048.34 0.8673966132396229 78 AMTR_s00071p00167530 evm_27.TU.AmTr_v1.0_scaffold00071.168 0.8664781989646271 94 AMTR_s00029p00106010 Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.107 0.8652877062907903 82 AMTR_s00185p00050380 RNA biosynthesis.transcriptional activation.bZIP superfamily.bZIP transcription factor evm_27.TU.AmTr_v1.0_scaffold00185.20 0.8643637341127188 84 AMTR_s00002p00252610 Transcriptional repressor ILP1 OS=Arabidopsis thaliana ILP1, evm_27.TU.AmTr_v1.0_scaffold00002.371 0.8633220503555205 88 AMTR_s00096p00085490 ECT7, evm_27.TU.AmTr_v1.0_scaffold00096.42 0.8622698779286462 92 AMTR_s00071p00045940 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component ERMO2, SEC24A, evm_27.TU.AmTr_v1.0_scaffold00071.24 0.8616906707449814 93 AMTR_s00033p00116200 KH domain-containing protein HEN4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.57 0.860588242622133 95 AMTR_s00095p00027730 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.8 0.860361277599058 96 AMTR_s00023p00236700 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.middle module.MED4 component evm_27.TU.AmTr_v1.0_scaffold00023.196 0.860353619556799 97 AMTR_s00025p00100140 RNA biosynthesis.transcriptional activation.HUA2 transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.84 0.8598202301115927 99