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  5. AMTR_s00109p00105850

AMTR_s00109p00105850 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.99

Description : Bark storage protein A OS=Populus deltoides


Gene families : OG0002104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002104_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00105850

Target Alias Description ECC score Gene Family Method Actions
AT4G24350 No alias Phosphorylase superfamily protein 0.03 OrthoFinder output from all 47 species
Azfi_s1035.g095889 No alias not classified & original description: CDS=82-1119 0.04 OrthoFinder output from all 47 species
Cba_g14092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26059 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_35477 No alias Bark storage protein A OS=Populus deltoides... 0.02 OrthoFinder output from all 47 species
LOC_Os01g12940.1 LOC_Os01g12940 Bark storage protein A OS=Populus deltoides... 0.04 OrthoFinder output from all 47 species
LOC_Os06g02210.1 LOC_Os06g02210 Bark storage protein A OS=Populus deltoides... 0.03 OrthoFinder output from all 47 species
Lfl_g27634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g08444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g16444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e036682_P001 Zm00001e036682 Bark storage protein B OS=Populus deltoides... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0009116 nucleoside metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016833 oxo-acid-lyase activity IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0033897 ribonuclease T2 activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000845 Nucleoside_phosphorylase_d 46 346
No external refs found!