1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00101p00134540

AMTR_s00101p00134540 (IMP4,...)


Aliases : IMP4, evm_27.TU.AmTr_v1.0_scaffold00101.112

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Imp4 assembly factor


Gene families : OG0006971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006971_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00101p00134540

Target Alias Description ECC score Gene Family Method Actions
Ala_g36862 IMP4 SSU processome assembly factor *(IMP4) & original... 0.02 OrthoFinder output from all 47 species
Aob_g01388 IMP4 SSU processome assembly factor *(IMP4) & original... 0.03 OrthoFinder output from all 47 species
Ceric.36G020800.1 IMP4, Ceric.36G020800 SSU processome assembly factor *(IMP4) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.22 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre10.g454100 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Dac_g09292 IMP4 SSU processome assembly factor *(IMP4) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01000834001 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Gb_23948 IMP4 SSU processome assembly factor (IMP4) 0.02 OrthoFinder output from all 47 species
LOC_Os08g05880.1 IMP4, LOC_Os08g05880 SSU processome assembly factor (IMP4) 0.02 OrthoFinder output from all 47 species
Mp2g04740.1 IMP4 SSU processome assembly factor (IMP4) 0.03 OrthoFinder output from all 47 species
Solyc01g007250.4.1 IMP4, Solyc01g007250 SSU processome assembly factor (IMP4) 0.03 OrthoFinder output from all 47 species
Zm00001e013140_P001 IMP4, Zm00001e013140 SSU processome assembly factor (IMP4) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008653 lipopolysaccharide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009103 lipopolysaccharide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 88 262
No external refs found!