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  5. AMTR_s00096p00105250

AMTR_s00096p00105250 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00096.64

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00096p00105250

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00112760 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.05 OrthoFinder output from all 47 species
AT1G10640 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G14650 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g112354 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g36775 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28456 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01855 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12304 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13416.t1 Aspi01Gene13416 EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44829.t1 Aspi01Gene44829 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0246.g060021 No alias EC_3.2 glycosylase & original description: CDS=1-1317 0.07 OrthoFinder output from all 47 species
Cba_g14013 No alias EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g11602 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43003 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g44374 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09828 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.04 OrthoFinder output from all 47 species
GSVIVT01017305001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01028189001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01032114001 QRT2 Polygalacturonase OS=Actinidia deliciosa 0.03 OrthoFinder output from all 47 species
GSVIVT01032117001 QRT2 Cell wall.pectin.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01032118001 QRT2 Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01033303001 ADPG2, PGAZAT Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01033364001 ADPG2, PGAZAT Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01038447001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_05788 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_12008 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_12018 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os03g59330.1 ADPG2, PGAZAT,... polygalacturonase (QRT2) 0.03 OrthoFinder output from all 47 species
LOC_Os05g20020.1 LOC_Os05g20020 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os05g46510.1 LOC_Os05g46510 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_101764g0010 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_427851g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.02 OrthoFinder output from all 47 species
Msp_g31860 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g11845 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41005 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g35940 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g64037 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g15323 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Smo78038 No alias Cell wall.pectin.modification and... 0.07 OrthoFinder output from all 47 species
Solyc02g032090.1.1 Solyc02g032090 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc03g116580.4.1 Solyc03g116580 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc04g008230.3.1 Solyc04g008230 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc08g014560.3.1 Solyc08g014560 Polygalacturonase OS=Prunus persica... 0.04 OrthoFinder output from all 47 species
Zm00001e027720_P001 Zm00001e027720 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0033897 ribonuclease T2 activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 6 223
No external refs found!