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  5. AMTR_s00092p00134420

AMTR_s00092p00134420 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.100

Description : Cell wall.hemicellulose.xyloglucan.modification and degradation.1,6-alpha-xylosidase


Gene families : OG0001972 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001972_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00134420
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT5G11720 No alias Glycosyl hydrolases family 31 protein 0.03 OrthoFinder output from all 47 species
Adi_g053686 ATXYL1, XYL1, TRG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037959001 No alias Enzyme classification.EC_3 hydrolases.EC_3.2... 0.03 OrthoFinder output from all 47 species
MA_10431114g0020 ATXYL1, XYL1, TRG1 Alpha-glucosidase OS=Spinacia oleracea... 0.03 OrthoFinder output from all 47 species
Solyc04g009630.3.1 Solyc04g009630 Alpha-glucosidase OS=Spinacia oleracea... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000322 Glyco_hydro_31 209 702
IPR025887 Glyco_hydro_31_N_dom 119 186
No external refs found!