AMTR_s00090p00178540 (ISE2, PDE317, EMB25,...)

Aliases : ISE2, PDE317, EMB25, evm_27.TU.AmTr_v1.0_scaffold00090.110

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase

Gene families : OG0004771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004771_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00090p00178540
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT1G70070	ISE2, PDE317, EMB25	DEAD/DEAH box helicase, putative	0.1	OrthoFinder output from all 47 species
Aev_g25423	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.02	OrthoFinder output from all 47 species
Ala_g22694	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
Als_g16449	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
Aop_g13240	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.08	OrthoFinder output from all 47 species
Azfi_s0003.g007647	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.08	OrthoFinder output from all 47 species
Cba_g14553	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
Ceric.18G021200.1	ISE2, PDE317,...	group-II intron splicing RNA helicase *(ISE2) & original...	0.06	OrthoFinder output from all 47 species
Dcu_g20011	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.07	OrthoFinder output from all 47 species
Dde_g08182	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g05098	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01020137001	ISE2, PDE317, EMB25	RNA processing.organelle machineries.RNA...	0.07	OrthoFinder output from all 47 species
Gb_35993	ISE2, PDE317, EMB25	RNA helicase (ISE2)	0.07	OrthoFinder output from all 47 species
LOC_Os02g50560.1	ISE2, PDE317,...	RNA helicase (ISE2)	0.08	OrthoFinder output from all 47 species
Len_g22559	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.05	OrthoFinder output from all 47 species
Lfl_g12767	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
MA_10437000g0020	ISE2, PDE317, EMB25	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic...	0.06	OrthoFinder output from all 47 species
Mp4g01470.1	ISE2, PDE317, EMB25	RNA helicase (ISE2)	0.05	OrthoFinder output from all 47 species
Msp_g14107	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g18791	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
Ore_g19053	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
Pnu_g09563	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g08266	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.07	OrthoFinder output from all 47 species
Sam_g07224	No alias	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
Smo440019	ISE2, PDE317, EMB25	Protein modification.phosphorylation.TKL kinase...	0.05	OrthoFinder output from all 47 species
Zm00001e015769_P001	ISE2, PDE317,...	RNA helicase (ISE2)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
MF	GO:0008184	glycogen phosphorylase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009975	cyclase activity	IEP	HCCA
MF	GO:0009976	tocopherol cyclase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016987	sigma factor activity	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	HCCA
MF	GO:0070403	NAD+ binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	388	449
IPR011545	DEAD/DEAH_box_helicase_dom	37	188
IPR012961	Ski2/MTR4_C	878	1042

External Links

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AMTR_s00090p00178540 (ISE2, PDE317, EMB25,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation