Sequence Description Alias PCC hrr AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component emb1211, evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9416046211563742 14 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH13, OSA1, ATH13, ATOSA1, evm_27.TU.AmTr_v1.0_scaffold00010.293 0.941424135577322 9 AMTR_s00048p00132600 Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana EMB976, evm_27.TU.AmTr_v1.0_scaffold00048.78 0.9376148053678413 5 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3, evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9350971763160362 4 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9335285063395387 15 AMTR_s00069p00147710 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter NAP8, ATNAP8, evm_27.TU.AmTr_v1.0_scaffold00069.114 0.9302737182301288 8 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase SRT2, AtSRT2, evm_27.TU.AmTr_v1.0_scaffold00017.263 0.9296768095021042 7 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9268699778382541 27 AMTR_s00004p00110090 Protein modification.phosphorylation.TKL kinase superfamily.LRR-VI kinase families.LRR-VI-1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.89 0.9266538876042102 13 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.9266169217746754 11 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component TIC110, ATTIC110, evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9261163289404959 20 AMTR_s00019p00093260 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana SLO1, evm_27.TU.AmTr_v1.0_scaffold00019.69 0.9258941345356869 12 AMTR_s00009p00241540 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease emb2746, evm_27.TU.AmTr_v1.0_scaffold00009.218 0.9252779250518831 13 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.9249474779961196 14 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00354.1 0.9237320848350002 15 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase RIF10, PNP, evm_27.TU.AmTr_v1.0_scaffold00004.78 0.9229809116798201 16 AMTR_s00057p00188930 GTP-binding protein OBGC, chloroplastic OS=Arabidopsis thaliana CPSAR1, EMB269, ATOBGC, evm_27.TU.AmTr_v1.0_scaffold00057.204 0.9226317457617009 17 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) ATSDX1, VTE1, evm_27.TU.AmTr_v1.0_scaffold00109.111 0.921596892371998 18 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9214464487427068 29 AMTR_s00011p00265800 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana EMB1270, evm_27.TU.AmTr_v1.0_scaffold00011.222 0.9209484633526472 20 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor FLN2, evm_27.TU.AmTr_v1.0_scaffold00047.167 0.920493501525964 21 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component ftsh9, evm_27.TU.AmTr_v1.0_scaffold00029.331 0.9199102706922591 22 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9196711823748999 24 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana WEB1, evm_27.TU.AmTr_v1.0_scaffold00029.410 0.9189819796563256 24 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.9183637115589792 25 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.9179007984657513 26 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.916475091671548 27 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.9154828975905162 28 AMTR_s00340p00004320 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.mCSF splicing factor evm_27.TU.AmTr_v1.0_scaffold00340.1 0.9149441796441942 29 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9141595968115444 30 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.9137187298095467 31 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.9123295984774563 32 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.911893586865419 43 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.9108671403421925 34 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGB, SIG2, SIGA, SIG1, RPOD1, evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9105711456214043 40 AMTR_s00015p00257490 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein TROL, evm_27.TU.AmTr_v1.0_scaffold00015.112 0.9101532538281257 36 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9099276280933756 37 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.262 0.908918018175407 38 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.9086882109354201 39 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor VAC1, ECB2, ATECB2 0.9067014552907993 64 AMTR_s00061p00182640 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease RNEE/G, evm_27.TU.AmTr_v1.0_scaffold00061.204 0.9058399951927969 74 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein EMB1956, Hsp88.1, HSP90.5, AtHsp90.5, CR88, evm_27.TU.AmTr_v1.0_scaffold00006.165 0.9056089122142505 42 AMTR_s00112p00086310 evm_27.TU.AmTr_v1.0_scaffold00112.21 0.9054672133959109 46 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.9051082017021089 44 AMTR_s00062p00185880 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CH-CPN60A, CPN60A, SLP, evm_27.TU.AmTr_v1.0_scaffold00062.184 0.9050681294283079 45 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9049383134377142 75 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana CRR22, evm_27.TU.AmTr_v1.0_scaffold00046.141 0.9041348550474516 48 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9029529522235088 53 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.9029524590298973 50 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme ATISA3, ISA3, evm_27.TU.AmTr_v1.0_scaffold00008.90 0.901378681630681 52 AMTR_s00004p00154100 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CrtISO carotenoid isomerase CRTISO, CCR2, evm_27.TU.AmTr_v1.0_scaffold00004.161 0.9011996681666435 53 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component emb1473, evm_27.TU.AmTr_v1.0_scaffold00046.169 0.9009169786162414 68 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.9007112359061604 55 AMTR_s00148p00069790 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-VIII kinase families.RLCK-VIII-sis kinase NCRK, evm_27.TU.AmTr_v1.0_scaffold00148.43 0.9004192074986881 56 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.9003786755519174 57 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana CSK, evm_27.TU.AmTr_v1.0_scaffold00049.272 0.900123429021335 58 AMTR_s00163p00072710 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00163.29 0.900090248353919 59 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.8999736518033674 75 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 54CP, SRP54CP, CPSRP54, FFC, evm_27.TU.AmTr_v1.0_scaffold00031.99 0.8995260293881359 77 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein DRP5B, ARC5, evm_27.TU.AmTr_v1.0_scaffold00121.36 0.8993959794285976 62 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase SEX1, SOP1, GWD, SOP, GWD1, evm_27.TU.AmTr_v1.0_scaffold00085.65 0.8993023259284024 64 AMTR_s00002p00265220 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor ATCFM3A, CFM3A, evm_27.TU.AmTr_v1.0_scaffold00002.494 0.8985631923638161 65 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component MURE, PDE316, ATMURE, evm_27.TU.AmTr_v1.0_scaffold00009.196 0.8984115942377472 66 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.8979709031228232 67 AMTR_s00049p00131450 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana DOT4, evm_27.TU.AmTr_v1.0_scaffold00049.110 0.8957656076685219 69 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.8955959156204507 70 AMTR_s00153p00036670 Lipid metabolism.galactolipid and sulfolipid synthesis.plastidial UDP-glucose pyrophosphorylase UGP3, evm_27.TU.AmTr_v1.0_scaffold00153.14 0.8955538669246976 71 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.895409106373454 72 AMTR_s00032p00234570 Protein SMG7L OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.265 0.8954066972404717 73 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8952754088538845 74 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.8949858410145003 76 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays EMB1865, evm_27.TU.AmTr_v1.0_scaffold00079.39 0.894792929894442 77 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.8940524032252029 78 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.8938422544015681 79 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor ATCFM2, CFM2, evm_27.TU.AmTr_v1.0_scaffold00028.138 0.893541980481772 95 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH8, evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8926686291491809 84 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor APG3, evm_27.TU.AmTr_v1.0_scaffold00057.217 0.8925040235895196 85 AMTR_s00006p00260630 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA, evm_27.TU.AmTr_v1.0_scaffold00006.223 0.8924606895173245 86 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana FZL, evm_27.TU.AmTr_v1.0_scaffold00025.402 0.8918822649774825 87 AMTR_s00027p00237750 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component DET1, ATDET1, FUS2, evm_27.TU.AmTr_v1.0_scaffold00027.131 0.8916455540292412 88 AMTR_s00077p00140050 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.NFS2 cysteine desulfurase component ATSUFS, CPNIFS, ATNFS2, SUFS, ATCPNIFS, evm_27.TU.AmTr_v1.0_scaffold00077.138 0.8916360681191622 89 AMTR_s00103p00143070 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.100 0.8906095523544417 90 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.8902454800677574 94 AMTR_s00067p00038470 CJD1, evm_27.TU.AmTr_v1.0_scaffold00067.21 0.8899310933047889 93 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana RFL1, evm_27.TU.AmTr_v1.0_scaffold00203.3 0.8899248224957467 94 AMTR_s00003p00075520 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GUN1, evm_27.TU.AmTr_v1.0_scaffold00003.43 0.889678935818005 96 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2, evm_27.TU.AmTr_v1.0_scaffold00045.272 0.8896057532523083 97 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.8892590795620521 98 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.8892491827953378 99