1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00086p00132870

AMTR_s00086p00132870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00086.75

No description available


Gene families : OG0003321 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003321_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00086p00132870

Target Alias Description ECC score Gene Family Method Actions
AT3G47890 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.1 OrthoFinder output from all 47 species
AT3G47910 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.13 OrthoFinder output from all 47 species
Adi_g058350 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g14795 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04590 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g06801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22460 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene09610.t1 Aspi01Gene09610 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0327.g065237 No alias not classified & original description: CDS=1-5397 0.04 OrthoFinder output from all 47 species
Ceric.1Z176700.1 Ceric.1Z176700 not classified & original description: pacid=50637339... 0.03 OrthoFinder output from all 47 species
Ceric.1Z194000.1 Ceric.1Z194000 not classified & original description: pacid=50618972... 0.13 OrthoFinder output from all 47 species
Cre12.g508250 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g28933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04153 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g07008 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g16619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008079001 No alias No description available 0.1 OrthoFinder output from all 47 species
LOC_Os03g06950.1 LOC_Os03g06950 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Len_g49533 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g12618 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_46922g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g13542 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44266 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g13760 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008734 No alias not classified & original description: CDS=269-5383 0.04 OrthoFinder output from all 47 species
Sam_g24494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g071120.3.1 Solyc06g071120 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Spa_g50989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02198 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e039017_P003 Zm00001e039017 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006866 DUF627_N 67 177
IPR006865 DUF629 328 854
IPR001394 Peptidase_C19_UCH 1379 1697
No external refs found!