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  5. AMTR_s00085p00112760

AMTR_s00085p00112760 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00085.69

Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.PGX1 polygalacturonase


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00085p00112760

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00105250 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.05 OrthoFinder output from all 47 species
AT1G10640 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G56710 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G60590 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G26610 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g112354 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04943 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12304 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13416.t1 Aspi01Gene13416 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11602 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09828 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013800001 No alias Cell wall.pectin.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01017305001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01032114001 QRT2 Polygalacturonase OS=Actinidia deliciosa 0.05 OrthoFinder output from all 47 species
GSVIVT01032117001 QRT2 Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01032118001 QRT2 Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01033362001 ADPG2, PGAZAT Cell wall.pectin.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01033364001 ADPG2, PGAZAT Cell wall.pectin.modification and... 0.04 OrthoFinder output from all 47 species
LOC_Os01g22590.1 LOC_Os01g22590 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g11760.1 QRT2, LOC_Os03g11760 Polygalacturonase OS=Actinidia deliciosa... 0.02 OrthoFinder output from all 47 species
LOC_Os05g46520.1 LOC_Os05g46520 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os05g50260.1 LOC_Os05g50260 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os11g14400.1 LOC_Os11g14400 Polygalacturonase OS=Prunus persica... 0.02 OrthoFinder output from all 47 species
Len_g55532 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17901 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11845 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41005 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Smo78038 No alias Cell wall.pectin.modification and... 0.05 OrthoFinder output from all 47 species
Solyc03g116580.4.1 Solyc03g116580 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc05g005040.4.1 Solyc05g005040 polygalacturonase (PGX1) 0.04 OrthoFinder output from all 47 species
Zm00001e016759_P001 Zm00001e016759 Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e032294_P001 Zm00001e032294 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 114 436
No external refs found!