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  5. AMTR_s00079p00183520

AMTR_s00079p00183520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00079.104

Description : Basic endochitinase OS=Vitis vinifera


Gene families : OG0000280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000280_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00079p00183520

Target Alias Description ECC score Gene Family Method Actions
Aev_g20377 HCHIB, B-CHI,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene23821.t1 ATEP3, EP3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene32118.t1 HCHIB, B-CHI,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19889 ATEP3, EP3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007190001 HCHIB, B-CHI,... Basic endochitinase OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
LOC_Os04g41620.1 ATEP3, EP3,... Chitinase 4 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os04g41680.1 ATEP3, EP3,... Chitinase 5 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_159244g0020 No alias Endochitinase A OS=Zea mays (sp|p29022|chia_maize : 251.0) 0.03 OrthoFinder output from all 47 species
MA_18470g0040 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_530083g0010 HCHIB, B-CHI,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g20262 ATEP3, EP3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g053380.3.1 ATEP3, EP3,... Chitinase 5 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 31 95
No external refs found!