- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LBD41, evm_27.TU.AmTr_v1.0_scaffold00079.30
Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor
Gene families : OG0001073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001073_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00079p00088960 | |
| Cluster | HCCA: Cluster_10 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G68510 | LBD42 | LOB domain-containing protein 42 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g041713 | LBD37, ASL39 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g086054 | LBD38 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g08245 | LBD38 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g02104 | LBD38 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g13473 | LBD38 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g20897 | LBD38 | AS2/LOB-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01011896001 | LBD42 | RNA biosynthesis.transcriptional activation.AS2/LOB... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01031035001 | No alias | RNA biosynthesis.transcriptional activation.AS2/LOB... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g03890.1 | LBD41, LOC_Os01g03890 | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g32770.1 | LBD41, LOC_Os01g32770 | transcription factor (AS2/LOB) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g33090.1 | LOC_Os03g33090 | transcription factor (AS2/LOB) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g41330.1 | LBD37, ASL39,... | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g26418 | LBD39 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_19934g0010 | LBD40 | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g20043 | LBD38 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g47667 | LBD41 | AS2/LOB-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g32695 | LBD38 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g119530.3.1 | LBD41, Solyc03g119530 | transcription factor (AS2/LOB) | 0.05 | OrthoFinder output from all 47 species | |
| Solyc05g009320.4.1 | LBD41, Solyc05g009320 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e001981_P001 | LBD41, Zm00001e001981 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e005129_P001 | LBD37, ASL39,... | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e017028_P001 | LBD40, Zm00001e017028 | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e027415_P001 | LBD41, Zm00001e027415 | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0003756 | protein disulfide isomerase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006855 | xenobiotic transmembrane transport | IEP | HCCA |
| BP | GO:0008037 | cell recognition | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015297 | antiporter activity | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | HCCA |
| MF | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | IEP | HCCA |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
| MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | HCCA |
| MF | GO:0016864 | intramolecular oxidoreductase activity, transposing S-S bonds | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| CC | GO:0031090 | organelle membrane | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0042908 | xenobiotic transport | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0048544 | recognition of pollen | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004883 | LOB | 4 | 107 |
| No external refs found! |