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  5. AMTR_s00078p00106380

AMTR_s00078p00106380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.77

Description : Cell wall.pectin.modification and degradation.pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00106380
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00049p00173370 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AT1G04680 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G14420 AT59 Pectate lyase family protein 0.15 OrthoFinder output from all 47 species
AT1G67750 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT2G02720 No alias Pectate lyase family protein 0.17 OrthoFinder output from all 47 species
AT3G01270 No alias Pectate lyase family protein 0.16 OrthoFinder output from all 47 species
AT3G07010 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G24230 No alias Pectate lyase family protein 0.05 OrthoFinder output from all 47 species
AT3G24670 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G27400 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G13210 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G22080 RHS14 root hair specific 14 0.03 OrthoFinder output from all 47 species
AT5G04310 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G09280 No alias Pectin lyase-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT5G15110 No alias Pectate lyase family protein 0.16 OrthoFinder output from all 47 species
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G63180 No alias Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g013762 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27583 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g21685 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g23901 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13674 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20815 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21580 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63228 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011291 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=272-1573 0.02 OrthoFinder output from all 47 species
Azfi_s0032.g024858 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1242 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033628 RHS14 EC_4.2 carbon-oxygen lyase & original description: CDS=168-1388 0.03 OrthoFinder output from all 47 species
Azfi_s0123.g048430 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=163-1392 0.03 OrthoFinder output from all 47 species
Azfi_s0168.g054627 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=18-1145 0.03 OrthoFinder output from all 47 species
Ceric.14G053300.1 Ceric.14G053300 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.22G068000.1 Ceric.22G068000 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.26G007400.1 Ceric.26G007400 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G051100.1 RHS14, Ceric.30G051100 EC_4.2 carbon-oxygen lyase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.30G051200.1 RHS14, Ceric.30G051200 EC_4.2 carbon-oxygen lyase & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.34G020500.1 Ceric.34G020500 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11741 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g39421 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43009 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43847 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g40377 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g00879 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03656 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05863 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g15970 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g31050 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.19 OrthoFinder output from all 47 species
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.14 OrthoFinder output from all 47 species
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.21 OrthoFinder output from all 47 species
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.2 OrthoFinder output from all 47 species
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
Gb_02248 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Gb_19802 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Gb_26755 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os02g12300.1 AT59, LOC_Os02g12300 pectate lyase 0.19 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.08 OrthoFinder output from all 47 species
LOC_Os05g22800.1 LOC_Os05g22800 pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os06g05209.1 LOC_Os06g05209 pectate lyase 0.12 OrthoFinder output from all 47 species
LOC_Os06g05260.1 LOC_Os06g05260 pectate lyase 0.12 OrthoFinder output from all 47 species
LOC_Os06g05272.1 AT59, LOC_Os06g05272 pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os06g38510.2 LOC_Os06g38510 pectate lyase 0.13 OrthoFinder output from all 47 species
LOC_Os10g31910.1 LOC_Os10g31910 pectate lyase 0.03 OrthoFinder output from all 47 species
Len_g13639 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
MA_101171g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10205415g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10426822g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10430145g0020 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_10437227g0030 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_1164682g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_203992g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_474372g0010 No alias pectate lyase 0.01 OrthoFinder output from all 47 species
MA_52869g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_66914g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_91467g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_97947g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
Nbi_g13732 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g26214 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26215 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41164 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g41165 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41450 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g27506 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g03086 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05797 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06396 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g27978 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003136 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1299 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0169.g024310 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=172-1407 0.03 OrthoFinder output from all 47 species
Sam_g03369 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11165 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16922 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39754 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc02g087670.3.1 Solyc02g087670 pectate lyase 0.07 OrthoFinder output from all 47 species
Solyc02g093580.4.1 Solyc02g093580 pectate lyase 0.05 OrthoFinder output from all 47 species
Solyc03g058890.4.1 AT59, Solyc03g058890 pectate lyase 0.15 OrthoFinder output from all 47 species
Solyc03g058910.3.1 AT59, Solyc03g058910 pectate lyase 0.15 OrthoFinder output from all 47 species
Solyc03g071570.3.1 Solyc03g071570 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc03g111690.4.1 Solyc03g111690 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc03g113150.3.1 AT59, Solyc03g113150 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc05g007080.4.1 AT59, Solyc05g007080 pectate lyase 0.18 OrthoFinder output from all 47 species
Solyc06g071020.3.1 Solyc06g071020 pectate lyase 0.07 OrthoFinder output from all 47 species
Solyc06g083580.4.1 Solyc06g083580 pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc09g061890.3.1 Solyc09g061890 pectate lyase 0.02 OrthoFinder output from all 47 species
Spa_g06272 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g31391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40115 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47003 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g57258 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07683 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e024959_P001 AT59, Zm00001e024959 pectate lyase 0.11 OrthoFinder output from all 47 species
Zm00001e030632_P001 Zm00001e030632 pectate lyase 0.02 OrthoFinder output from all 47 species
Zm00001e037311_P001 Zm00001e037311 pectate lyase 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006071 glycerol metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019400 alditol metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 28 79
IPR002022 Pec_lyase 172 355
No external refs found!