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  5. AMTR_s00072p00176080

AMTR_s00072p00176080 (ATGCN1, GCN1,...)


Aliases : ATGCN1, GCN1, evm_27.TU.AmTr_v1.0_scaffold00072.127

Description : ABC transporter F family member 1 OS=Arabidopsis thaliana


Gene families : OG0003164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00072p00176080
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Als_g40172 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01343 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02650 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G026600.1 ATGCN1, GCN1,... not classified & original description: pacid=50600930... 0.03 OrthoFinder output from all 47 species
Lfl_g01954 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22362 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01962 ATGCN1, GCN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04071 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e017809_P001 ATGCN1, GCN1,... ABC transporter F family member 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e039565_P001 ATGCN1, GCN1,... ABC transporter F family member 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 108 241
IPR003439 ABC_transporter-like_ATP-bd 420 527
No external refs found!