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  5. AMTR_s00071p00125410

AMTR_s00071p00125410 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.102

Description : RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor


Gene families : OG0008097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00071p00125410

Target Alias Description ECC score Gene Family Method Actions
Gb_32072 No alias RNA editing factor (MORF) 0.04 OrthoFinder output from all 47 species
MA_5791g0010 No alias RNA editing factor (MORF) 0.04 OrthoFinder output from all 47 species
Solyc02g079210.3.1 Solyc02g079210 RNA editing factor (MORF) 0.03 OrthoFinder output from all 47 species
Solyc05g054960.4.1 Solyc05g054960 RNA editing factor (MORF) 0.03 OrthoFinder output from all 47 species
Zm00001e021318_P001 Zm00001e021318 RNA editing factor (MORF) 0.02 OrthoFinder output from all 47 species
Zm00001e041660_P001 Zm00001e041660 RNA editing factor (MORF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016841 ammonia-lyase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!