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  5. AMTR_s00071p00074520

AMTR_s00071p00074520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.45

Description : PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006741 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006741_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00071p00074520
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT1G77090 No alias Mog1/PsbP/DUF1795-like photosystem II reaction center... 0.04 OrthoFinder output from all 47 species
Aev_g31777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.35G021700.1 Ceric.35G021700 not classified & original description: pacid=50580848... 0.06 OrthoFinder output from all 47 species
Dac_g00401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04309 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01010018001 No alias PsbP domain-containing protein 4, chloroplastic... 0.05 OrthoFinder output from all 47 species
LOC_Os12g08830.1 LOC_Os12g08830 PsbP domain-containing protein 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
Lfl_g35597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g26600.1 No alias PsbP domain-containing protein 4, chloroplastic... 0.04 OrthoFinder output from all 47 species
Ore_g26017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01184 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g05874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16097 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 122 264
No external refs found!