1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00069p00173060

AMTR_s00069p00173060 (MOS1,...)


Aliases : MOS1, evm_27.TU.AmTr_v1.0_scaffold00069.150

Description : Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana


Gene families : OG0008537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008537_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00173060
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT4G24680 MOS1 modifier of snc1 0.06 OrthoFinder output from all 47 species
Aev_g20330 MOS1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g01706 MOS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007703001 MOS1 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_16752 MOS1 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Mp7g05710.1 MOS1 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Ore_g16111 MOS1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g16836 MOS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c4_22960V3.1 MOS1, Pp3c4_22960 modifier of snc1 0.01 OrthoFinder output from all 47 species
Smo443140 MOS1 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc03g112660.3.1 MOS1, Solyc03g112660 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006278 RNA-templated DNA biosynthetic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009738 BAT2_N 13 136
No external refs found!