Aliases : EMB1989, RPB2, NRPB2, evm_27.TU.AmTr_v1.0_scaffold00068.139
Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2
Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aev_g39406 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g21244 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.07 | OrthoFinder output from all 47 species | |
Als_g03892 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene15628.t1 | EMB1989, RPB2,... | component *(NRPB2) of RNA polymerase II complex &... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g01330 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.05G021300.1 | EMB1989, RPB2,... | component *(NRPB2) of RNA polymerase II complex &... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.30G032600.1 | NRPC2, Ceric.30G032600 | component *(NRPC2) of RNA polymerase III complex &... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000158.16 | EMB1989, RPB2, NRPB2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020554.9 | NRPC2 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cre02.g075150 | EMB1989, RPB2, NRPB2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.01 | OrthoFinder output from all 47 species | |
Dac_g02906 | DRD2, NRPE2,... | component *(NRPE2) of RNA polymerase V complex &... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g09431 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g01758 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g17296 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g24202 | DRD2, NRPE2,... | component *(NRPE2) of RNA polymerase V complex &... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01020543001 | EMB1989, RPB2, NRPB2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.1 | OrthoFinder output from all 47 species | |
GSVIVT01036596001 | NRPC2 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
Gb_05262 | NRPC2 | subunit 2 of Pol III RNA polymerase | 0.04 | OrthoFinder output from all 47 species | |
Gb_30006 | EMB1989, RPB2, NRPB2 | subunit 2 of Pol II RNA polymerase | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os03g44484.1 | EMB1989, RPB2,... | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... | 0.06 | OrthoFinder output from all 47 species | |
Len_g03917 | DRD2, NRPE2,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Len_g16317 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.07 | OrthoFinder output from all 47 species | |
Len_g29891 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g12805 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.05 | OrthoFinder output from all 47 species | |
MA_10429035g0010 | EMB1989, RPB2, NRPB2 | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... | 0.03 | OrthoFinder output from all 47 species | |
MA_10429035g0020 | EMB1989, RPB2, NRPB2 | subunit 2 of Pol II RNA polymerase | 0.05 | OrthoFinder output from all 47 species | |
MA_10429035g0030 | EMB1989, RPB2, NRPB2 | DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
MA_10432131g0010 | EMB1989, RPB2, NRPB2 | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... | 0.04 | OrthoFinder output from all 47 species | |
Mp4g21160.1 | EMB1989, RPB2, NRPB2 | subunit 2 of Pol II RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
Mp5g21260.1 | DRD2, NRPE2,... | subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g14155 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g01478 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g18280 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g25703 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.06 | OrthoFinder output from all 47 species | |
Pp3c3_35890V3.1 | Pp3c3_35890 | DNA-directed RNA polymerase family protein | 0.01 | OrthoFinder output from all 47 species | |
Smo148107 | EMB1989, RPB2, NRPB2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.05 | OrthoFinder output from all 47 species | |
Smo443461 | NRPC2 | RNA biosynthesis.transcriptional activation.AP2/ERF... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g078260.3.1 | EMB1989, RPB2,... | subunit 2 of Pol II RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e005007_P001 | EMB1989, RPB2,... | subunit 2 of Pol II RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e012400_P001 | EMB1989, RPB2,... | subunit 2 of Pol II RNA polymerase | 0.08 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
MF | GO:0004221 | obsolete ubiquitin thiolesterase activity | IEP | HCCA |
MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005543 | phospholipid binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005681 | spliceosomal complex | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006813 | potassium ion transport | IEP | HCCA |
BP | GO:0007264 | small GTPase mediated signal transduction | IEP | HCCA |
MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
MF | GO:0008289 | lipid binding | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
MF | GO:0015299 | obsolete solute:proton antiporter activity | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |