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  5. AMTR_s00062p00113470

AMTR_s00062p00113470 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00062.93

Description : DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana


Gene families : OG0005520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00062p00113470

Target Alias Description ECC score Gene Family Method Actions
Aop_g14661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07834.t1 Aspi01Gene07834 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre07.g334200 No alias DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_18686 No alias DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g05660.1 LOC_Os02g05660 DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Len_g04335 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g18960.1 No alias DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013399 No alias not classified & original description: CDS=1-1587 0.03 OrthoFinder output from all 47 species
Sam_g09581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g068280.3.1 Solyc06g068280 DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e038223_P001 Zm00001e038223 DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005938 cell cortex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0032065 maintenance of protein location in cell cortex IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 172 351
IPR001650 Helicase_C 418 494
No external refs found!