AMTR_s00060p00174830 (RP1, RPL3A, emb2207,...)

Aliases : RP1, RPL3A, emb2207, ARP1, evm_27.TU.AmTr_v1.0_scaffold00060.112

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component

Gene families : OG0001891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001891_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00060p00174830

Target	Alias	Description	ECC score	Gene Family Method
AT1G43170	RP1, RPL3A, emb2207, ARP1	ribosomal protein 1	0.16	OrthoFinder output from all 47 species
Adi_g011360	RP1, RPL3A, emb2207, ARP1	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g045425	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g105187	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aev_g23904	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Als_g04821	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g32693	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aob_g04930	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g10507	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aop_g11770	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0015.g013966	RP1, RPL3A, emb2207, ARP1	component *(uL3) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Azfi_s0113.g045879	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ceric.22G040700.1	RPL3B, ARP2,...	component *(uL3) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ceric.26G061200.1	RPL3B, ARP2,...	component *(uL3) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000025.50	RPL3B, ARP2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Cre10.g417700	RP1, RPL3A, emb2207, ARP1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Dac_g13025	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dde_g24590	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g49884	RPL3B, ARP2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06618	RP1, RPL3A, emb2207, ARP1	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g06763	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01022284001	No alias	60S ribosomal protein L3 OS=Oryza sativa subsp. japonica	0.01	OrthoFinder output from all 47 species
GSVIVT01023241001	RPL3B, ARP2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01034555001	RP1, RPL3A, emb2207, ARP1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Gb_11963	RP1, RPL3A, emb2207, ARP1	component RPL3 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Gb_35746	RP1, RPL3A, emb2207, ARP1	component RPL3 of LSU proteome component	0.11	OrthoFinder output from all 47 species
LOC_Os11g06750.1	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.11	OrthoFinder output from all 47 species
LOC_Os12g07010.1	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Len_g18215	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Len_g28843	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
MA_10432758g0010	RP1, RPL3A, emb2207, ARP1	component RPL3 of LSU proteome component	0.2	OrthoFinder output from all 47 species
MA_124178g0010	RPL3B, ARP2	component RPL3 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Mp1g18990.1	RPL3B, ARP2	component RPL3 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Msp_g08488	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Msp_g16581	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g04174	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g07397	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ore_g42353	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c10_25460V3.1	RPL3B, ARP2, Pp3c10_25460	R-protein L3 B	0.07	OrthoFinder output from all 47 species
Ppi_g54601	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g04295	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g09820	No alias	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g09821	No alias	component *(uL3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g40822	No alias	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo270706	RP1, RPL3A, emb2207, ARP1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Solyc01g104590.3.1	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Spa_g10027	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g48300	RP1, RPL3A, emb2207, ARP1	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Spa_g55689	RPL3B, ARP2	not classified & original description: none	0.1	OrthoFinder output from all 47 species
Tin_g00740	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e001224_P002	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Zm00001e008122_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e008127_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e009061_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e009065_P002	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	50	343

External Links

No external refs found!

AMTR_s00060p00174830 (RP1, RPL3A, emb2207,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation