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  5. AMTR_s00059p00213590

AMTR_s00059p00213590 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.250

Description : Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpT plant-specific stabilizing component


Gene families : OG0007488 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007488_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00059p00213590

Target Alias Description ECC score Gene Family Method Actions
AT4G12060 No alias Double Clp-N motif protein 0.03 OrthoFinder output from all 47 species
AT4G25370 No alias Double Clp-N motif protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene18165.t2 Aspi01Gene18165 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0072.g037001 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Cba_g05046 No alias plant-specific stabilizing component *(ClpT) of... 0.02 OrthoFinder output from all 47 species
Len_g10201 No alias plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
MA_12551g0010 No alias plant-specific stabilizing component ClpT of chloroplast... 0.03 OrthoFinder output from all 47 species
MA_377212g0010 No alias plant-specific stabilizing component ClpT of chloroplast... 0.03 OrthoFinder output from all 47 species
Mp6g19150.1 No alias plant-specific stabilizing component ClpT of chloroplast... 0.03 OrthoFinder output from all 47 species
Ppi_g32744 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Sam_g11082 No alias plant-specific stabilizing component *(ClpT) of... 0.05 OrthoFinder output from all 47 species
Solyc03g007110.3.1 Solyc03g007110 plant-specific stabilizing component ClpT of chloroplast... 0.02 OrthoFinder output from all 47 species
Zm00001e001033_P002 Zm00001e001033 plant-specific stabilizing component ClpT of chloroplast... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0019538 protein metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 187 230
IPR004176 Clp_R_dom 104 156
No external refs found!