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  5. AMTR_s00058p00171240

AMTR_s00058p00171240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00058.156

No description available


Gene families : OG0001131 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00058p00171240
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT2G39670 No alias Radical SAM superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g114284 No alias RlmN-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23487 No alias RlmN-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12635 No alias RlmN-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72608.t1 Aspi01Gene72608 RlmN-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0665.g081748 No alias RlmN-type rRNA methyltransferase & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g04499 No alias RlmN-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G040900.1 Ceric.08G040900 RlmN-type rRNA methyltransferase & original description:... 0.06 OrthoFinder output from all 47 species
Cre05.g238500 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g14671 No alias RlmN-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01123 No alias RlmN-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016561001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01020239001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_41070 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g45370.1 LOC_Os01g45370 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g74190.1 LOC_Os01g74190 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g06989 No alias RlmN-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g04510.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g12660.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g03954 No alias RlmN-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03927 No alias RlmN-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28734 No alias RlmN-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13438 No alias RlmN-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46988 No alias RlmN-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025527 No alias RlmN-type rRNA methyltransferase & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g08674 No alias RlmN-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13128 No alias RlmN-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Smo85220 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc06g030570.3.1 Solyc06g030570 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g08864 No alias RlmN-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003856 3-dehydroquinate synthase activity IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004828 serine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006434 seryl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007197 rSAM 164 332
No external refs found!