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  5. AMTR_s00056p00216230

AMTR_s00056p00216230 (emb2411,...)


Aliases : emb2411, evm_27.TU.AmTr_v1.0_scaffold00056.211

Description : Cell cycle.interphase.DNA replication.maturation.auxiliary factor (JHS1/DNA2)


Gene families : OG0006070 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00216230

Target Alias Description ECC score Gene Family Method Actions
AT1G08840 emb2411 DNA replication helicase, putative 0.03 OrthoFinder output from all 47 species
Ceric.35G004800.1 emb2411, Ceric.35G004800 DNA replication auxiliary factor *(JHS1/DNA2) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.40 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.42 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.43 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre12.g528200 emb2411 Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01018404001 emb2411 No description available 0.09 OrthoFinder output from all 47 species
GSVIVT01018406001 emb2411 Cell cycle.interphase.DNA... 0.07 OrthoFinder output from all 47 species
Gb_09620 emb2411 DNA replication auxiliary factor (JHS1/DNA2) 0.03 OrthoFinder output from all 47 species
LOC_Os04g49860.1 emb2411, LOC_Os04g49860 DNA replication auxiliary factor (JHS1/DNA2) 0.06 OrthoFinder output from all 47 species
MA_35265g0010 emb2411 DNA replication auxiliary factor (JHS1/DNA2) 0.03 OrthoFinder output from all 47 species
MA_43331g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Sam_g13996 No alias DNA replication auxiliary factor *(JHS1/DNA2) & original... 0.03 OrthoFinder output from all 47 species
Solyc01g088380.3.1 emb2411, Solyc01g088380 DNA replication auxiliary factor (JHS1/DNA2) 0.13 OrthoFinder output from all 47 species
Tin_g31867 emb2411 DNA replication auxiliary factor *(JHS1/DNA2) & original... 0.07 OrthoFinder output from all 47 species
Zm00001e007116_P001 emb2411, Zm00001e007116 DNA replication auxiliary factor (JHS1/DNA2) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR014808 DNA_replication_fac_Dna2_N 10 45
No external refs found!