AMTR_s00056p00085520 (ICU4, ATHB15,...)

Aliases : ICU4, ATHB15, ATHB-15, CNA, evm_27.TU.AmTr_v1.0_scaffold00056.60

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP III transcription factor

Gene families : OG0000446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000446_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00056p00085520

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00155p00069240	PHB-1D, ATHB-14,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
AT4G32880	HB-8, ATHB8, ATHB-8	homeobox gene 8	0.02	OrthoFinder output from all 47 species
Adi_g017286	PHB-1D, ATHB-14,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g04492	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g39406	PHB-1D, ATHB-14,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g05567	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g07101	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene40272.t1	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0250.g060252	PHB-1D, ATHB-14,...	transcriptional co-regulator *(ZPR) & original...	0.03	OrthoFinder output from all 47 species
Cba_g22008	HB-8, ATHB8, ATHB-8	transcriptional co-regulator *(ZPR) & original description: none	0.06	OrthoFinder output from all 47 species
Cba_g23262	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g28120	PHB-1D, ATHB-14,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g45098	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.06G052700.1	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.17G020900.1	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.17G083000.1	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original...	0.04	OrthoFinder output from all 47 species
Ceric.18G068400.1	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.23G045900.1	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original...	0.02	OrthoFinder output from all 47 species
Dac_g09166	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07882	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12681	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01017010001	ICU4, ATHB15,...	RNA biosynthesis.transcriptional activation.HB...	0.08	OrthoFinder output from all 47 species
GSVIVT01021625001	PHB-1D, ATHB-14,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01025193001	IFL1, IFL, REV	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01035612001	ICU4, ATHB15,...	RNA biosynthesis.transcriptional activation.HB...	0.06	OrthoFinder output from all 47 species
Gb_02083	ICU4, ATHB15,...	transcription factor (HD-ZIP III)	0.03	OrthoFinder output from all 47 species
LOC_Os03g01890.1	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.02	OrthoFinder output from all 47 species
LOC_Os03g43930.1	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
LOC_Os12g41860.1	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.05	OrthoFinder output from all 47 species
Len_g30347	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Mp1g24140.1	HB-8, ATHB8, ATHB-8	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
Msp_g11640	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g26097	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g22245	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003695	PHB-1D, ATHB-14,...	not classified & original description: CDS=3209-3661	0.03	OrthoFinder output from all 47 species
Sam_g08842	No alias	transcriptional co-regulator *(ZPR) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g08843	No alias	transcriptional co-regulator *(ZPR) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g10819	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo270954	ICU4, ATHB15,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
Smo77000	PHB-1D, ATHB-14,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Solyc02g024070.3.1	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
Solyc08g066500.4.1	ICU4, ATHB15,...	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
Solyc11g069470.3.1	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.03	OrthoFinder output from all 47 species
Solyc12g044410.2.1	ICU4, ATHB15,...	transcription factor (HD-ZIP III)	0.02	OrthoFinder output from all 47 species
Spa_g08598	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000073_P001	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.03	OrthoFinder output from all 47 species
Zm00001e003226_P004	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
Zm00001e004553_P004	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
Zm00001e005034_P001	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.05	OrthoFinder output from all 47 species
Zm00001e018118_P002	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
Zm00001e039093_P002	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0009039	urease activity	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009581	detection of external stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009583	detection of light stimulus	IEP	HCCA
BP	GO:0009584	detection of visible light	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
MF	GO:0016151	nickel cation binding	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018298	obsolete protein-chromophore linkage	IEP	HCCA
BP	GO:0019627	urea metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043419	urea catabolic process	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA
BP	GO:0043605	amide catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0071941	nitrogen cycle metabolic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	17	75
IPR002913	START_lipid-bd_dom	161	369
IPR013978	MEKHLA	694	841

External Links

No external refs found!

AMTR_s00056p00085520 (ICU4, ATHB15,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation