AMTR_s00051p00020930 (WOX4,...)

Aliases : WOX4, evm_27.TU.AmTr_v1.0_scaffold00051.5

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.WOX transcription factor

Gene families : OG0001319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001319_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00051p00020930

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00225270	WOX7,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
AMTR_s00405p00009920	WUS, PGA6, WUS1,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
AT1G46480	WOX4	WUSCHEL related homeobox 4	0.1	OrthoFinder output from all 47 species
AT2G17950	WUS, PGA6, WUS1	Homeodomain-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT3G11260	WOX5	WUSCHEL related homeobox 5	0.04	OrthoFinder output from all 47 species
AT5G05770	WOX7	WUSCHEL related homeobox 7	0.03	OrthoFinder output from all 47 species
Adi_g077524	STPL, WOX8	WOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g16803	STPL, WOX8	WOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g35686	STIP, HB-3, WOX9	WOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g41802	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g22693	STPL, WOX8	WOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g35638	STPL, WOX8	WOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0014.g013545	WOX12	WOX-type transcription factor & original description: CDS=21-1280	0.04	OrthoFinder output from all 47 species
Ceric.19G009200.1	STPL, WOX8,...	WOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.19G069000.1	STPL, WOX8,...	WOX-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.1Z064100.1	WOX12, Ceric.1Z064100	WOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.1Z064800.1	WOX12, Ceric.1Z064800	WOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.27G012000.1	WUS, PGA6, WUS1,...	WOX-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.32G042200.1	STPL, WOX8,...	WOX-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.32G042300.1	STPL, WOX8,...	WOX-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.32G042400.1	STPL, WOX8,...	WOX-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Dac_g07674	PFS2, HOS9, WOX6	WOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g33241	STPL, WOX8	WOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g50892	STIP, HB-3, WOX9	WOX-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01008424001	WOX1	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
GSVIVT01009453001	WOX4	RNA biosynthesis.transcriptional activation.HB...	0.08	OrthoFinder output from all 47 species
GSVIVT01016360001	WOX5	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01018787001	WUS, PGA6, WUS1	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Gb_05339	WOX4	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
Gb_12565	WOX4	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
Gb_29958	WOX1	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
LOC_Os01g62310.1	WOX2, LOC_Os01g62310	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
LOC_Os11g01130.2	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
MA_10344604g0010	STIP, HB-3, WOX9	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
MA_1910g0010	STIP, HB-3, WOX9	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
MA_42637g0010	WOX2	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
MA_8832398g0010	WOX2	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Solyc03g118770.4.1	WOX1, Solyc03g118770	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
Solyc04g078650.4.1	WOX4, Solyc04g078650	transcription factor (WOX)	0.1	OrthoFinder output from all 47 species
Solyc06g075567.1.1	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Solyc11g072770.2.1	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.08	OrthoFinder output from all 47 species
Solyc11g072790.2.1	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Zm00001e006644_P002	WUS, PGA6, WUS1,...	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
Zm00001e009121_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Zm00001e024170_P001	Zm00001e024170	WUSCHEL-related homeobox 3B OS=Zea mays...	0.03	OrthoFinder output from all 47 species
Zm00001e028720_P001	WOX5, Zm00001e028720	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Zm00001e028776_P002	WOX2, Zm00001e028776	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
Zm00001e041785_P001	WOX4, Zm00001e041785	transcription factor (WOX)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	87	146

External Links

No external refs found!

AMTR_s00051p00020930 (WOX4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation