AMTR_s00048p00089530 (HDG5, HB-7,...)

Aliases : HDG5, HB-7, evm_27.TU.AmTr_v1.0_scaffold00048.42

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP IV transcription factor

Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00048p00089530
Cluster	HCCA: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
AT4G04890	PDF2	protodermal factor 2	0.02	OrthoFinder output from all 47 species
AT4G21750	ATML1	Homeobox-leucine zipper family protein / lipid-binding...	0.04	OrthoFinder output from all 47 species
AT5G46880	HDG5, HB-7	homeobox-7	0.02	OrthoFinder output from all 47 species
Adi_g006830	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g080315	HDG2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g110417	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g23646	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g25555	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g27709	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g27191	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g53005	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene27628.t1	ATML1, Aspi01Gene27628	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene57033.t1	ATML1, Aspi01Gene57033	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0006.g009667	PDF2	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0064.g035524	PDF2	HD-ZIP IV-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0301.g063735	ATML1	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0591.g078757	ATML1	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s2071.g108976	PDF2	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g04722	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g14579	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.12G070600.1	PDF2, Ceric.12G070600	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.29G064400.1	ATML1, Ceric.29G064400	HD-ZIP IV-type transcription factor & original...	0.07	OrthoFinder output from all 47 species
Dcu_g15268	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g20177	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g01751	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g06455	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g18586	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13320	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g15559	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01029396001	EDT1, HDG11, ATHDG11	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
LOC_Os01g57890.1	PDF2, LOC_Os01g57890	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
LOC_Os02g45250.1	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
LOC_Os04g53540.3	PDF2, LOC_Os04g53540	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
LOC_Os06g10600.1	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
LOC_Os08g08820.2	PDF2, LOC_Os08g08820	transcription factor (HD-ZIP IV)	0.06	OrthoFinder output from all 47 species
Len_g01380	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_8859629g0010	PDF2	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Nbi_g13790	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23330	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g19174	EDT1, HDG11, ATHDG11	HD-ZIP IV-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g37968	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g09188	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001922	ATML1	HD-ZIP IV-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005253	ATML1	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005255	ATML1	HD-ZIP IV-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006777	ATML1	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013927	PDF2	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g12326	No alias	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g080260.4.1	PDF2, Solyc02g080260	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Solyc06g072310.3.1	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Solyc09g015110.2.1	Solyc09g015110	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g16174	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g46298	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g51145	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g45820	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Zm00001e002453_P001	HDG5, HB-7,...	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Zm00001e019597_P001	PDF2, Zm00001e019597	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
Zm00001e040312_P001	PDF2, Zm00001e040312	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Zm00001e041695_P001	PDF2, Zm00001e041695	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006835	dicarboxylic acid transport	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
BP	GO:0015711	organic anion transport	IEP	HCCA
BP	GO:0015740	C4-dicarboxylate transport	IEP	HCCA
BP	GO:0015743	malate transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
BP	GO:0046942	carboxylic acid transport	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	88	143
IPR002913	START_lipid-bd_dom	296	520

External Links

No external refs found!

AMTR_s00048p00089530 (HDG5, HB-7,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation