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  5. AMTR_s00044p00144180

AMTR_s00044p00144180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00044.143

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13a component


Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00044p00144180

Target Alias Description ECC score Gene Family Method Actions
AT3G07110 No alias Ribosomal protein L13 family protein 0.1 OrthoFinder output from all 47 species
AT3G24830 No alias Ribosomal protein L13 family protein 0.1 OrthoFinder output from all 47 species
AT4G13170 No alias Ribosomal protein L13 family protein 0.06 OrthoFinder output from all 47 species
AT5G48760 No alias Ribosomal protein L13 family protein 0.11 OrthoFinder output from all 47 species
Adi_g108658 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g124594 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00711 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g12384 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g39853 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g06902 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g15634 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g22675 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aspi01Gene27742.t1 Aspi01Gene27742 component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0075.g037721 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0272.g061284 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0594.g078801 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.05G058300.1 Ceric.05G058300 component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.20G024700.1 Ceric.20G024700 component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.29 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Cre12.g532550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Dac_g00316 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g06037 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g34535 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dde_g02606 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01021080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01028661001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os03g54890.1 LOC_Os03g54890 component RPL13a of LSU proteome component 0.1 OrthoFinder output from all 47 species
LOC_Os07g01870.1 LOC_Os07g01870 component RPL13a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Len_g10030 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g02678 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g21734 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_186340g0010 No alias component RPL13a of LSU proteome component 0.11 OrthoFinder output from all 47 species
Mp2g08690.1 No alias component RPL13a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Mp4g15790.1 No alias component RPL13a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Msp_g06781 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g04609 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g10936 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c11_17280V3.1 Pp3c11_17280 Ribosomal protein L13 family protein 0.04 OrthoFinder output from all 47 species
Pp3c19_10330V3.1 Pp3c19_10330 Ribosomal protein L13 family protein 0.06 OrthoFinder output from all 47 species
Pp3c1_15830V3.1 Pp3c1_15830 Ribosomal protein L13 family protein 0.06 OrthoFinder output from all 47 species
Pp3c2_20550V3.1 Pp3c2_20550 Ribosomal protein L13 family protein 0.05 OrthoFinder output from all 47 species
Ppi_g25630 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05746 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g07579 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g14122 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g31286 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Smo166650 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Solyc05g053670.3.1 Solyc05g053670 component RPL13a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Solyc09g091740.4.1 Solyc09g091740 component RPL13a of LSU proteome component 0.09 OrthoFinder output from all 47 species
Spa_g10532 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Spa_g15627 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Spa_g15628 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Spa_g44762 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g00453 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e005719_P002 Zm00001e005719 component RPL13a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e012017_P002 Zm00001e012017 component RPL13a of LSU proteome component 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0048037 obsolete cofactor binding IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 12 125
No external refs found!