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  5. AMTR_s00041p00216070

AMTR_s00041p00216070 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.233

Description : Probable amidase At4g34880 OS=Arabidopsis thaliana


Gene families : OG0004248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00216070

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00208990 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00041p00213600 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00041p00219760 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g26821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024065001 No alias Probable amidase At4g34880 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os04g10410.1 LOC_Os04g10410 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os04g10569.1 LOC_Os04g10569 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_49284g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0214.g025994 No alias not classified & original description: CDS=1-1410 0.03 OrthoFinder output from all 47 species
Smo234630 No alias Probable amidase At4g34880 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g111220.3.1 Solyc01g111220 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc11g071550.2.1 Solyc11g071550 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR000120 Amidase 1 90
No external refs found!