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  5. AMTR_s00041p00203840

AMTR_s00041p00203840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.187

Description : Translocon-associated protein subunit alpha OS=Arabidopsis thaliana


Gene families : OG0002375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00203840
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Adi_g060841 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01577 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_109428g0010 No alias Translocon-associated protein subunit alpha... 0.02 OrthoFinder output from all 47 species
Nbi_g03388 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030172_P001 Zm00001e030172 Translocon-associated protein subunit alpha... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003995 acyl-CoA dehydrogenase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0052890 oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005595 TRAP_alpha 37 253
No external refs found!