1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00041p00160040

AMTR_s00041p00160040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.113

No description available


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00160040

Target Alias Description ECC score Gene Family Method Actions
AT1G58370 ATXYN1, RXF12 glycosyl hydrolase family 10 protein /... 0.03 OrthoFinder output from all 47 species
AT4G08160 No alias glycosyl hydrolase family 10 protein /... 0.03 OrthoFinder output from all 47 species
Adi_g007681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.30G036100.1 Ceric.30G036100 not classified & original description: pacid=50608372... 0.02 OrthoFinder output from all 47 species
LOC_Os01g04290.1 LOC_Os01g04290 endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
LOC_Os03g10469.1 LOC_Os03g10469 no description available(sp|q680b7|xyn4_arath : 358.0) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006025 No alias not classified & original description: CDS=1-2073 0.02 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
Zm00001e038773_P006 Zm00001e038773 no description available(sp|q84wt5|xyn5l_arath : 388.0) 0.02 OrthoFinder output from all 47 species
Zm00001e040632_P001 Zm00001e040632 no description available(sp|q680b7|xyn4_arath : 318.0) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
InterPro domains Description Start Stop
IPR001000 GH10_dom 201 460
No external refs found!