AMTR_s00039p00234990 (PHR2,...)

Aliases : PHR2, evm_27.TU.AmTr_v1.0_scaffold00039.224

Description : Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana

Gene families : OG0002446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002446_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00039p00234990
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT2G47590	PHR2	photolyase/blue-light receptor 2	0.04	OrthoFinder output from all 47 species	Cytoscape.js
Adi_g009893	PHR2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g079478	PHR2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g079479	PHR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g13086	PHR2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020965.69	PHR2	Cryptochrome DASH, chloroplastic/mitochondrial...	0.02	OrthoFinder output from all 47 species
Dcu_g14608	PHR2	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g01575	PHR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10436605g0010	PHR2	Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Nbi_g11245	PHR2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c1_18130V3.1	PHR2, Pp3c1_18130	photolyase/blue-light receptor 2	0.01	OrthoFinder output from all 47 species
Sam_g28592	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc09g075180.3.1	PHR2, Solyc09g075180	Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003913	DNA photolyase activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004852	uroporphyrinogen-III synthase activity	IEP	HCCA
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	HCCA
MF	GO:0005347	ATP transmembrane transporter activity	IEP	HCCA
MF	GO:0005471	ATP:ADP antiporter activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	HCCA
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	HCCA
MF	GO:0015217	ADP transmembrane transporter activity	IEP	HCCA
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006050	DNA_photolyase_N	129	287
IPR005101	Cryptochr/Photolyase_FAD-bd	342	450

External Links

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AMTR_s00039p00234990 (PHR2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation