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  5. AMTR_s00039p00212570

AMTR_s00039p00212570 (MAC3A,...)


Aliases : MAC3A, evm_27.TU.AmTr_v1.0_scaffold00039.183

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.MAC3 component


Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00212570

Target Alias Description ECC score Gene Family Method Actions
AT1G04510 MAC3A MOS4-associated complex 3A 0.03 OrthoFinder output from all 47 species
Adi_g109115 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15635 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g50451 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05020 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001501.3 MAC3B Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001501.4 MAC3A Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Cre02.g073650 MAC3B RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Dcu_g02996 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g12381 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os10g32880.1 MAC3A, LOC_Os10g32880 component MAC3 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species
Lfl_g03225 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
MA_20260g0010 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.06 OrthoFinder output from all 47 species
Msp_g02452 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09114 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0429.g027376 MAC3B E3 ubiquitin protein ligase *(PUB60) & original... 0.02 OrthoFinder output from all 47 species
Sam_g15915 No alias E3 ubiquitin protein ligase *(PUB60) & original description: none 0.06 OrthoFinder output from all 47 species
Smo437541 MAC3B RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Solyc09g090660.3.1 MAC3A, Solyc09g090660 component MAC3 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species
Tin_g15095 MAC3A E3 ubiquiTin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013915 Pre-mRNA_splic_Prp19 65 132
IPR001680 WD40_repeat 257 293
IPR001680 WD40_repeat 398 432
IPR001680 WD40_repeat 494 520
IPR001680 WD40_repeat 302 339
No external refs found!