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  5. AMTR_s00039p00198940

AMTR_s00039p00198940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.163

Description : Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.large subunit proteome.mtRPL24 component


Gene families : OG0006883 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006883_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00198940

Target Alias Description ECC score Gene Family Method Actions
Aob_g05701 No alias component *(uL24m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Azfi_s0390.g067676 No alias component *(uL24m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre07.g330450 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Gb_25179 No alias component mtRPL24 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os11g04370.1 LOC_Os11g04370 component mtRPL24 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
MA_10134g0010 No alias component mtRPL24 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Nbi_g02696 No alias component *(uL24m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc08g075850.3.1 Solyc08g075850 component mtRPL24 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e024081_P001 Zm00001e024081 component mtRPL24 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006450 regulation of translational fidelity IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005824 KOW 17 48
No external refs found!