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  5. AMTR_s00039p00186000

AMTR_s00039p00186000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.149

Description : WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana


Gene families : OG0002376 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002376_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00186000

Target Alias Description ECC score Gene Family Method Actions
Adi_g064513 No alias component *(GID7) of GID ubiquitination complex &... 0.02 OrthoFinder output from all 47 species
Aev_g04787 No alias component *(GID7) of GID ubiquitination complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01020819001 No alias WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01020820001 No alias WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Len_g16239 No alias component *(GID7) of GID ubiquitination complex &... 0.03 OrthoFinder output from all 47 species
Sam_g19596 No alias component *(GID7) of GID ubiquitination complex &... 0.02 OrthoFinder output from all 47 species
Sam_g28191 No alias component *(GID7) of GID ubiquitination complex &... 0.03 OrthoFinder output from all 47 species
Smo268628 No alias WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e029283_P004 Zm00001e029283 WD repeat-containing protein 26 homolog OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 328 364
IPR001680 WD40_repeat 497 534
IPR001680 WD40_repeat 478 492
IPR001680 WD40_repeat 287 323
IPR001680 WD40_repeat 242 277
No external refs found!