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Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.202
Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana
Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G03110 | No alias | RNA binding;nucleic acid binding | 0.03 | OrthoFinder output from all 47 species | |
| AT5G46190 | No alias | RNA-binding KH domain-containing protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g008962 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g017897 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g024339 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g075983 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g108369 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g03920 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g09715 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g08517 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g09611 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g62599 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g03944 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g01553 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g07829 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g09234 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g09896 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01038571001 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04773 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g11925 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g21684 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g05936 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g13999 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g14000 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g08472 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g16383 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g007810.3.1 | Solyc05g007810 | RNA-binding KH domain-containing protein RCF3... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g010840.2.1 | Solyc11g010840 | RNA-binding KH domain-containing protein RCF3... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016597 | amino acid binding | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043177 | organic acid binding | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| No external refs found! |