AMTR_s00030p00241220 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.211

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NOG1 regulatory GTPase

Gene families : OG0004754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004754_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00030p00241220

Target	Alias	Description	ECC score	Gene Family Method
AT1G50920	No alias	Nucleolar GTP-binding protein	0.06	OrthoFinder output from all 47 species
Aop_g01799	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.02	OrthoFinder output from all 47 species
Cba_g68683	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.02	OrthoFinder output from all 47 species
Ceric.01G116000.1	Ceric.01G116000	regulatory GTPase (NOG1) of LSU processome & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021432.35	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Dac_g01698	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.03	OrthoFinder output from all 47 species
Dcu_g03970	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.04	OrthoFinder output from all 47 species
Dde_g18132	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.04	OrthoFinder output from all 47 species
Ehy_g11193	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.02	OrthoFinder output from all 47 species
Gb_00431	No alias	NOG1 LSU processome regulatory GTPase	0.03	OrthoFinder output from all 47 species
Gb_05997	No alias	NOG1 LSU processome regulatory GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os07g01920.1	LOC_Os07g01920	NOG1 LSU processome regulatory GTPase	0.04	OrthoFinder output from all 47 species
Lfl_g02079	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.02	OrthoFinder output from all 47 species
MA_89272g0010	No alias	NOG1 LSU processome regulatory GTPase	0.04	OrthoFinder output from all 47 species
Pp3c23_20710V3.1	Pp3c23_20710	Nucleolar GTP-binding protein	0.02	OrthoFinder output from all 47 species
Ppi_g31063	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.03	OrthoFinder output from all 47 species
Solyc01g081010.4.1	Solyc01g081010	NOG1 LSU processome regulatory GTPase	0.03	OrthoFinder output from all 47 species
Solyc07g053730.4.1	Solyc07g053730	NOG1 LSU processome regulatory GTPase	0.05	OrthoFinder output from all 47 species
Spa_g09142	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.03	OrthoFinder output from all 47 species
Tin_g04665	No alias	regulatory GTPase (NOG1) of LSU processome & original...	0.04	OrthoFinder output from all 47 species
Zm00001e030762_P002	Zm00001e030762	NOG1 LSU processome regulatory GTPase	0.07	OrthoFinder output from all 47 species
Zm00001e036251_P001	Zm00001e036251	NOG1 LSU processome regulatory GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005381	iron ion transmembrane transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015093	ferrous iron transmembrane transporter activity	IEA	Interproscan
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	None	Extended
MF	GO:0046915	transition metal ion transmembrane transporter activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012973	NOG_C	409	463
IPR010674	NOG1_Rossman_fold_dom	235	292

External Links

No external refs found!

AMTR_s00030p00241220 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation