AMTR_s00030p00231260 (E2FB, ATE2FB, E2F1,...)

Aliases : E2FB, ATE2FB, E2F1, evm_27.TU.AmTr_v1.0_scaffold00030.186

Description : RNA biosynthesis.transcriptional activation.E2F/DP transcription factor

Gene families : OG0001575 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001575_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00030p00231260
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
Adi_g085816	E2FB, ATE2FB, E2F1	E2F-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g09985	E2FB, ATE2FB, E2F1	E2F-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g10488	E2FB, ATE2FB, E2F1	E2F-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.05G101500.1	E2FB, ATE2FB,...	E2F-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dde_g01728	E2FB, ATE2FB, E2F1	E2F-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g14214	E2FB, ATE2FB, E2F1	E2F-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g13317	E2FB, ATE2FB, E2F1	E2F-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Mp1g02890.1	E2FB, ATE2FB, E2F1	E2F cell cycle interphase transcription factor....	0.02	OrthoFinder output from all 47 species
Msp_g14880	E2FB, ATE2FB, E2F1	E2F-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19992	No alias	E2F-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003316	E2F_WHTH_DNA-bd_dom	138	203

External Links

No external refs found!

AMTR_s00030p00231260 (E2FB, ATE2FB, E2F1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation