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  5. AMTR_s00030p00185140

AMTR_s00030p00185140 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.118

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NSA2 maturation factor


Gene families : OG0003771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00185140

Target Alias Description ECC score Gene Family Method Actions
Aev_g03695 No alias LSU processome maturation factor *(NSA2) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0059.g034517 No alias LSU processome maturation factor *(NSA2) & original... 0.06 OrthoFinder output from all 47 species
Ceric.07G100700.1 Ceric.07G100700 LSU processome maturation factor *(NSA2) & original... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.38 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Dac_g42224 No alias LSU processome maturation factor *(NSA2) & original... 0.06 OrthoFinder output from all 47 species
Dde_g09563 No alias LSU processome maturation factor *(NSA2) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011153001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Gb_20609 No alias NSA2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g47580.1 LOC_Os07g47580 NSA2 LSU processome maturation factor 0.05 OrthoFinder output from all 47 species
Len_g01146 No alias LSU processome maturation factor *(NSA2) & original... 0.03 OrthoFinder output from all 47 species
Len_g54661 No alias LSU processome maturation factor *(NSA2) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g20840 No alias LSU processome maturation factor *(NSA2) & original... 0.03 OrthoFinder output from all 47 species
Mp4g23600.1 No alias NSA2 LSU processome maturation factor 0.1 OrthoFinder output from all 47 species
Msp_g01445 No alias LSU processome maturation factor *(NSA2) & original... 0.03 OrthoFinder output from all 47 species
Ore_g09249 No alias LSU processome maturation factor *(NSA2) & original... 0.03 OrthoFinder output from all 47 species
Sam_g40225 No alias LSU processome maturation factor *(NSA2) & original... 0.02 OrthoFinder output from all 47 species
Smo402189 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Spa_g00911 No alias LSU processome maturation factor *(NSA2) & original... 0.03 OrthoFinder output from all 47 species
Tin_g05409 No alias LSU processome maturation factor *(NSA2) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e010952_P001 Zm00001e010952 NSA2 LSU processome maturation factor 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 1 259
No external refs found!