1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00030p00138110

AMTR_s00030p00138110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.87

Description : COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana


Gene families : OG0001278 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001278_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00138110
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Ceric.01G113100.1 Ceric.01G113100 not classified & original description: pacid=50591929... 0.04 OrthoFinder output from all 47 species
Ehy_g09022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019618001 No alias COMPASS-like H3K4 histone methylase component WDR5A... 0.03 OrthoFinder output from all 47 species
LOC_Os04g44700.1 LOC_Os04g44700 COMPASS-like H3K4 histone methylase component WDR5A... 0.03 OrthoFinder output from all 47 species
Solyc10g086430.3.1 Solyc10g086430 COMPASS-like H3K4 histone methylase component WDR5B... 0.03 OrthoFinder output from all 47 species
Zm00001e006528_P001 Zm00001e006528 COMPASS-like H3K4 histone methylase component WDR5B... 0.05 OrthoFinder output from all 47 species
Zm00001e041942_P002 Zm00001e041942 COMPASS-like H3K4 histone methylase component WDR5B... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0052736 beta-glucanase activity IEP HCCA
MF GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group IEP HCCA
MF GO:0052862 glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 390 425
IPR001680 WD40_repeat 431 467
IPR001680 WD40_repeat 578 602
IPR001680 WD40_repeat 291 323
No external refs found!