1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00029p00240750

AMTR_s00029p00240750 (NFD03, HMGB3, NFD3,...)


Aliases : NFD03, HMGB3, NFD3, evm_27.TU.AmTr_v1.0_scaffold00029.412

Description : High mobility group B protein 1 OS=Arabidopsis thaliana


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00240750

Target Alias Description ECC score Gene Family Method Actions
Adi_g040798 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Als_g22881 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059828 NFD03, HMGB3, NFD3 not classified & original description: CDS=1-552 0.03 OrthoFinder output from all 47 species
Cba_g24481 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020806.25 ATHMG, HMG, SSRP1, NFD High mobility group B protein 13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre06.g261450 ATHMG, HMG, SSRP1, NFD No description available 0.02 OrthoFinder output from all 47 species
Cre11.g480950 ATHMG, HMG, SSRP1, NFD No description available 0.02 OrthoFinder output from all 47 species
Dac_g31445 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09616 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Gb_39428 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 120.0) 0.04 OrthoFinder output from all 47 species
LOC_Os06g51220.2 NFD2, HMG BETA... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g24838 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014473 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g06141 No alias DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Sam_g37720 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Spa_g20871 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 56 125
No external refs found!