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  5. AMTR_s00029p00231170

AMTR_s00029p00231170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.368

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP0 component


Gene families : OG0002053 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002053_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00231170

Target Alias Description ECC score Gene Family Method Actions
AT3G09200 No alias Ribosomal protein L10 family protein 0.24 OrthoFinder output from all 47 species
AT3G11250 No alias Ribosomal protein L10 family protein 0.15 OrthoFinder output from all 47 species
Adi_g013157 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g017387 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g01443 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g13520 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aspi01Gene70147.t1 Aspi01Gene70147 component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0024.g020356 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Ceric.18G048600.1 Ceric.18G048600 component *(uL10) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.69 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder output from all 47 species
Cre12.g520500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Dac_g01446 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g00958 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g24985 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
GSVIVT01032857001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Gb_29821 No alias 60S acidic ribosomal protein P0 OS=Glycine max... 0.02 OrthoFinder output from all 47 species
LOC_Os08g03640.1 LOC_Os08g03640 component RPP0 of LSU proteome component 0.14 OrthoFinder output from all 47 species
LOC_Os11g04070.1 LOC_Os11g04070 component RPP0 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os12g03880.1 LOC_Os12g03880 component RPP0 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Len_g16154 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Lfl_g04026 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10433058g0020 No alias component RPP0 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Mp1g07120.1 No alias component RPP0 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Nbi_g05238 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ore_g06033 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g10636 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g44948 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g44949 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c11_3700V3.1 Pp3c11_3700 Ribosomal protein L10 family protein 0.06 OrthoFinder output from all 47 species
Pp3c1_8280V3.1 Pp3c1_8280 Ribosomal protein L10 family protein 0.14 OrthoFinder output from all 47 species
Ppi_g22136 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g29825 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005433 No alias component *(cpTatC) of thylakoid membrane Tat... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008845 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g06149 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g06150 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g09753 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g09883 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Sam_g12721 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g45533 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo149765 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Solyc05g054580.3.1 Solyc05g054580 component RPP0 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Solyc06g076870.4.1 Solyc06g076870 component RPP0 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Spa_g56101 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Tin_g14132 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e021786_P001 Zm00001e021786 component RPP0 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Zm00001e029292_P001 Zm00001e029292 component RPP0 of LSU proteome component 0.21 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006414 translational elongation IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 7 108
No external refs found!