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  5. AMTR_s00028p00245370

AMTR_s00028p00245370 (ATCFM2, CFM2,...)


Aliases : ATCFM2, CFM2, evm_27.TU.AmTr_v1.0_scaffold00028.138

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00028p00245370
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.13 OrthoFinder output from all 47 species
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.14 OrthoFinder output from all 47 species
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.07 OrthoFinder output from all 47 species
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.06 OrthoFinder output from all 47 species
Adi_g022878 ATCFM3A, CFM3A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g01593 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.04 OrthoFinder output from all 47 species
Ala_g21267 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27469 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03895 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17963 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25751 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12971.t1 Aspi01Gene12971 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14208.t1 ATCFM2, CFM2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008527 ATCFM2, CFM2 not classified & original description: CDS=155-3025 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013833 ATCFM2, CFM2 not classified & original description: CDS=1-3243 0.09 OrthoFinder output from all 47 species
Azfi_s0203.g057681 ATCFM2, CFM2 not classified & original description: CDS=1647-4091 0.02 OrthoFinder output from all 47 species
Cba_g10843 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11329 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16678 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G053300.1 ATCFM2, CFM2,... not classified & original description: pacid=50577844... 0.06 OrthoFinder output from all 47 species
Ceric.23G047600.1 ATCFM2, CFM2,... not classified & original description: pacid=50611491... 0.04 OrthoFinder output from all 47 species
Ceric.31G056300.1 ATCFM2, CFM2,... not classified & original description: pacid=50573909... 0.08 OrthoFinder output from all 47 species
Dcu_g18891 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g25274 ATCFM2, CFM2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g25682 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30519 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12628 EMB1865 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21472 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01008296001 EMB1865 CRM-domain containing factor CFM3,... 0.12 OrthoFinder output from all 47 species
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01018109001 ATCFM3A, CFM3A RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01031001001 ATCRS1, CRS1 RNA processing.organelle machineries.RNA... 0.08 OrthoFinder output from all 47 species
GSVIVT01032542001 ATCFM2, CFM2 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
Gb_18303 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.05 OrthoFinder output from all 47 species
Gb_37638 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor. CFM3-type... 0.07 OrthoFinder output from all 47 species
Gb_39217 EMB1865 CFM2-type plastidial RNA splicing factor 0.06 OrthoFinder output from all 47 species
LOC_Os04g39060.2 ATCFM2, CFM2,... CRM-domain containing factor CFM2, chloroplastic... 0.1 OrthoFinder output from all 47 species
LOC_Os05g47850.1 EMB1865, LOC_Os05g47850 CRM-domain containing factor CFM3,... 0.06 OrthoFinder output from all 47 species
LOC_Os08g27150.1 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os11g37990.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.07 OrthoFinder output from all 47 species
MA_10432072g0010 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
MA_10435740g0010 EMB1865 CFM2-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Mp3g06280.1 ATCFM2, CFM2 CRM-domain containing factor CFM3,... 0.12 OrthoFinder output from all 47 species
Msp_g43371 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10122 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17170 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25479 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35546 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.05 OrthoFinder output from all 47 species
Pir_g18629 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g29461 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46980 ATCFM3A, CFM3A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023856 ATCFM2, CFM2 not classified & original description: CDS=91-3327 0.03 OrthoFinder output from all 47 species
Sam_g08382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo120007 No alias CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
Smo20706 EMB1865 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Smo412905 No alias CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
Solyc02g087250.4.1 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.01 OrthoFinder output from all 47 species
Solyc03g119450.3.1 EMB1865, Solyc03g119450 CRM-domain containing factor CFM3,... 0.09 OrthoFinder output from all 47 species
Solyc07g039500.4.1 Solyc07g039500 CRM-domain containing factor CFM3,... 0.1 OrthoFinder output from all 47 species
Solyc09g083350.3.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
Tin_g06122 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004284_P002 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e032339_P002 EMB1865, Zm00001e032339 CRM-domain containing factor CFM3,... 0.1 OrthoFinder output from all 47 species
Zm00001e033939_P001 Zm00001e033939 CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
Zm00001e041033_P001 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e041034_P001 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016149 translation release factor activity, codon specific IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 383 467
IPR001890 RNA-binding_CRM 898 984
IPR001890 RNA-binding_CRM 587 674
IPR001890 RNA-binding_CRM 165 246
No external refs found!