AMTR_s00025p00200390 (HEN2,...)

Aliases : HEN2, evm_27.TU.AmTr_v1.0_scaffold00025.254

Description : RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase

Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00200390

Target	Alias	Description	ECC score	Gene Family Method
AT1G59760	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.03	OrthoFinder output from all 47 species
AT2G06990	HEN2	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.03	OrthoFinder output from all 47 species
Adi_g022453	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.02	OrthoFinder output from all 47 species
Aev_g05538	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Aev_g17654	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Ala_g07737	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Als_g01202	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Aob_g29585	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.02	OrthoFinder output from all 47 species
Aop_g27842	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Ceric.15G051600.1	Ceric.15G051600	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.04	OrthoFinder output from all 47 species
Cre06.g289950	HEN2	RNA processing.RNA decay.exosome complex.associated...	0.01	OrthoFinder output from all 47 species
Cre11.g482483	No alias	RNA processing.RNA decay.exosome complex.associated...	0.02	OrthoFinder output from all 47 species
Dcu_g03136	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.02	OrthoFinder output from all 47 species
Dcu_g18967	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Dde_g30301	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.02	OrthoFinder output from all 47 species
Dde_g31250	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
LOC_Os02g06500.1	LOC_Os02g06500	RNA helicase component SKI2 of SUPERKILLER (SKI)...	0.02	OrthoFinder output from all 47 species
LOC_Os11g07500.1	HEN2, LOC_Os11g07500	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Len_g20478	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Len_g58854	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.02	OrthoFinder output from all 47 species
Lfl_g02309	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.02	OrthoFinder output from all 47 species
Lfl_g38626	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
MA_10437094g0010	No alias	DExH-box ATP-dependent RNA helicase DExH11...	0.03	OrthoFinder output from all 47 species
MA_107869g0010	No alias	DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp1g05510.1	No alias	RNA helicase component SKI2 of SUPERKILLER (SKI)...	0.03	OrthoFinder output from all 47 species
Ore_g17493	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Pnu_g07586	HEN2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g12955	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025703	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Sam_g14012	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.05	OrthoFinder output from all 47 species
Smo174598	No alias	RNA processing.RNA decay.exosome complex.associated...	0.02	OrthoFinder output from all 47 species
Smo403447	No alias	RNA processing.RNA decay.exosome complex.associated...	0.04	OrthoFinder output from all 47 species
Solyc01g103080.3.1	Solyc01g103080	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Solyc06g005990.4.1	Solyc06g005990	DExH-box ATP-dependent RNA helicase DExH11...	0.06	OrthoFinder output from all 47 species
Solyc12g017860.3.1	HEN2, Solyc12g017860	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.04	OrthoFinder output from all 47 species
Spa_g29638	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Zm00001e013693_P002	Zm00001e013693	RNA helicase component SKI2 of SUPERKILLER (SKI)...	0.05	OrthoFinder output from all 47 species
Zm00001e025923_P001	HEN2, Zm00001e025923	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.02	OrthoFinder output from all 47 species
Zm00001e036710_P004	Zm00001e036710	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051090	regulation of DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025696	rRNA_proc-arch_dom	526	791
IPR011545	DEAD/DEAH_box_helicase_dom	77	223
IPR012961	Ski2/MTR4_C	814	993
IPR001650	Helicase_C	394	470

External Links

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AMTR_s00025p00200390 (HEN2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation